FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0219, 162 aa
  1>>>pF1KE0219 162 - 162 aa - 162 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9683+/-0.000804; mu= 14.0229+/- 0.049
 mean_var=59.3649+/-12.027, 0's: 0 Z-trim(106.3): 14  B-trim: 0 in 0/51
 Lambda= 0.166460
 statistics sampled from 8893 (8902) to 8893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS5766.1 CAV2 gene_id:858|Hs108|chr7             ( 162) 1092 270.2 3.9e-73
CCDS55156.1 CAV1 gene_id:857|Hs108|chr7            ( 147)  355 93.2 6.9e-20
CCDS5767.1 CAV1 gene_id:857|Hs108|chr7             ( 178)  355 93.2 8.1e-20
CCDS5765.1 CAV2 gene_id:858|Hs108|chr7             ( 112)  346 90.9 2.5e-19
CCDS2569.1 CAV3 gene_id:859|Hs108|chr3             ( 151)  327 86.5 7.5e-18


>>CCDS5766.1 CAV2 gene_id:858|Hs108|chr7                  (162 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 1426.4  bits: 270.2 E(32554): 3.9e-73
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KE0 MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVK
               70        80        90       100       110       120

              130       140       150       160  
pF1KE0 TCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD
       ::::::::::::::::::::::::::::::::::::::::::
CCDS57 TCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD
              130       140       150       160  

>>CCDS55156.1 CAV1 gene_id:857|Hs108|chr7                 (147 aa)
 initn: 359 init1: 321 opt: 355  Z-score: 470.5  bits: 93.2 E(32554): 6.9e-20
Smith-Waterman score: 355; 40.8% identity (74.4% similar) in 125 aa overlap (39-162:22-146)

       10        20        30        40         50        60       
pF1KE0 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD
                                     .:::..::. . :. ::::::::  :::::
CCDS55          MADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFD
                        10        20        30        40        50 

        70        80        90       100       110       120       
pF1KE0 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP
        .:  : . : ..:: .:..:.....::.:.: :: :: :: :::: ..: .:. :. . 
CCDS55 GIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQ
              60        70        80        90       100       110 

       130       140       150       160   
pF1KE0 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 
        .. ...  . ..  ::  .::. ::.: ..:... 
CCDS55 CISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
             120       130       140       

>>CCDS5767.1 CAV1 gene_id:857|Hs108|chr7                  (178 aa)
 initn: 359 init1: 321 opt: 355  Z-score: 469.2  bits: 93.2 E(32554): 8.1e-20
Smith-Waterman score: 355; 40.8% identity (74.4% similar) in 125 aa overlap (39-162:53-177)

       10        20        30        40         50        60       
pF1KE0 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD
                                     .:::..::. . :. ::::::::  :::::
CCDS57 NIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFD
             30        40        50        60        70        80  

        70        80        90       100       110       120       
pF1KE0 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP
        .:  : . : ..:: .:..:.....::.:.: :: :: :: :::: ..: .:. :. . 
CCDS57 GIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQ
             90       100       110       120       130       140  

       130       140       150       160   
pF1KE0 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 
        .. ...  . ..  ::  .::. ::.: ..:... 
CCDS57 CISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
            150       160       170        

>>CCDS5765.1 CAV2 gene_id:858|Hs108|chr7                  (112 aa)
 initn: 358 init1: 346 opt: 346  Z-score: 460.6  bits: 90.9 E(32554): 2.5e-19
Smith-Waterman score: 346; 100.0% identity (100.0% similar) in 50 aa overlap (1-50:1-50)

               10        20        30        40        50        60
pF1KE0 MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKLGFEDVIAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS57 MGLETEKADVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHLKDFNAFCKDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVK
                                                                   
CCDS57 NGSAFSADNMEECDRCYHCSIVYERRTMLLFCQPATEPGLNTWTPGLEIGIL        
               70        80        90       100       110          

>>CCDS2569.1 CAV3 gene_id:859|Hs108|chr3                  (151 aa)
 initn: 332 init1: 298 opt: 327  Z-score: 434.0  bits: 86.5 E(32554): 7.5e-18
Smith-Waterman score: 327; 39.2% identity (72.0% similar) in 125 aa overlap (39-162:26-150)

       10        20        30        40         50        60       
pF1KE0 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD
                                     .:::. .:  . :. ::::::::: :.:::
CCDS25      MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFD
                    10        20        30        40        50     

        70        80        90       100       110       120       
pF1KE0 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP
        ::  :.. : .:::  :..:...:..:::.. :.::: .:  ::: ..: .:. :. . 
CCDS25 GVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQ
          60        70        80        90       100       110     

       130       140       150       160   
pF1KE0 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 
        .. :..    ..  :: ...:.  ::... : .. 
CCDS25 CISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
         120       130       140       150 




162 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:49:38 2016 done: Sat Nov  5 01:49:39 2016
 Total Scan time:  1.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]