FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0234, 254 aa
  1>>>pF1KE0234 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9874+/-0.000656; mu= 11.9114+/- 0.040
 mean_var=73.6577+/-14.860, 0's: 0 Z-trim(111.3): 9  B-trim: 48 in 1/51
 Lambda= 0.149439
 statistics sampled from 12237 (12246) to 12237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.376), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS35338.1 PGAM4 gene_id:441531|Hs108|chrX        ( 254) 1727 380.8 4.8e-106
CCDS7458.1 PGAM1 gene_id:5223|Hs108|chr10          ( 254) 1637 361.4 3.3e-100
CCDS34624.1 PGAM2 gene_id:5224|Hs108|chr7          ( 253) 1371 304.1   6e-83
CCDS5833.1 BPGM gene_id:669|Hs108|chr7             ( 259)  977 219.1 2.3e-57


>>CCDS35338.1 PGAM4 gene_id:441531|Hs108|chrX             (254 aa)
 initn: 1727 init1: 1727 opt: 1727  Z-score: 2017.4  bits: 380.8 E(32554): 4.8e-106
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE0 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVC
              190       200       210       220       230       240

              250    
pF1KE0 KAIEAVAAQGKAKK
       ::::::::::::::
CCDS35 KAIEAVAAQGKAKK
              250    

>>CCDS7458.1 PGAM1 gene_id:5223|Hs108|chr10               (254 aa)
 initn: 1637 init1: 1637 opt: 1637  Z-score: 1912.5  bits: 361.4 E(32554): 3.3e-100
Smith-Waterman score: 1637; 95.7% identity (98.4% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE0 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
       ::::::::::::::.:::::::: :::::::::::::::::::::::::::::::.::::
CCDS74 MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKR
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::
CCDS74 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVC
       ::::::::::.::.::.:::::::::::::::::::::::::::::::::::::::::: 
CCDS74 VLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVR
              190       200       210       220       230       240

              250    
pF1KE0 KAIEAVAAQGKAKK
       ::.:::::::::::
CCDS74 KAMEAVAAQGKAKK
              250    

>>CCDS34624.1 PGAM2 gene_id:5224|Hs108|chr7               (253 aa)
 initn: 1371 init1: 1371 opt: 1371  Z-score: 1602.6  bits: 304.1 E(32554): 6e-83
Smith-Waterman score: 1371; 77.9% identity (91.3% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KE0 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
       ::...::..:::::::: ::::  :.::.::  : ::::::..:..:: .::::: ::: 
CCDS34 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
       ::.:::::..::. ::::::::::::::::::::::::::::::::::: ::::::::.:
CCDS34 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKR
       .:::::.  ::.:..:::.:::: :   .::. :: :::::::::::::::::::: :::
CCDS34 IPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVC
       ::::::::::.::.::.::.:..:::::::::::::::::.:.::: :::::::::::: 
CCDS34 VLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVR
              190       200       210       220       230       240

              250    
pF1KE0 KAIEAVAAQGKAKK
       ::.:::::::::: 
CCDS34 KAMEAVAAQGKAK 
              250    

>>CCDS5833.1 BPGM gene_id:669|Hs108|chr7                  (259 aa)
 initn: 979 init1: 577 opt: 977  Z-score: 1143.4  bits: 219.1 E(32554): 2.3e-57
Smith-Waterman score: 977; 52.0% identity (77.7% similar) in 256 aa overlap (1-254:1-256)

               10        20        30        40        50        60
pF1KE0 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
       :. :::...::::..:: ::::  : :  :.  : :::.  :. :.  ..:::. .::: 
CCDS58 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
       .: :.: : .:. . : :.::  .:::::::::.: :::. . : .::: ::..:::::.
CCDS58 NRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYN
               70        80        90       100       110       120

              130       140         150       160       170        
pF1KE0 VPPPPMEPDHPFYSNISKDRRYA--DLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEG
       : :::.: .::.:..: .::::   :.  ::::  :: ::.. : ::.:::.:.:.. .:
CCDS58 VTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRG
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE0 KRVLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEET
       : .::.::::: ... ::.::.:.: :....::::.::. :::.::. . : :::::.:.
CCDS58 KTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPHQFLGDQEA
              190       200       210       220       230       240

      240       250       
pF1KE0 VCKAIEAVAAQGKAKK   
       .  ::. :  :::.:.   
CCDS58 IQAAIKKVEDQGKVKQAKK
              250         




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:06:42 2016 done: Thu Nov  3 20:06:42 2016
 Total Scan time:  1.860 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]