FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0240, 490 aa
  1>>>pF1KE0240 490 - 490 aa - 490 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1718+/-0.000373; mu= 2.9066+/- 0.023
 mean_var=286.6987+/-58.839, 0's: 0 Z-trim(123.4): 12  B-trim: 2141 in 2/54
 Lambda= 0.075746
 statistics sampled from 43086 (43101) to 43086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.505), width:  16
 Scan time: 12.360

The best scores are:                                      opt bits E(85289)
NP_001073882 (OMIM: 610934,611548) homeobox protei ( 691) 3396 384.4 5.5e-106
XP_016867231 (OMIM: 610934,611548) PREDICTED: home ( 659) 2185 252.1 3.6e-66


>>NP_001073882 (OMIM: 610934,611548) homeobox protein NO  (691 aa)
 initn: 3396 init1: 3396 opt: 3396  Z-score: 2023.8  bits: 384.4 E(85289): 5.5e-106
Smith-Waterman score: 3396; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)

               10        20        30        40        50        60
pF1KE0 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK
              430       440       450       460       470       480

              490                                                  
pF1KE0 DGPCGSWGTR                                                  
       :::::::::                                                   
NP_001 DGPCGSWGTSITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQSPQPKLPYLPT
              490       500       510       520       530       540

>>XP_016867231 (OMIM: 610934,611548) PREDICTED: homeobox  (659 aa)
 initn: 2220 init1: 2185 opt: 2185  Z-score: 1308.9  bits: 252.1 E(85289): 3.6e-66
Smith-Waterman score: 3111; 93.5% identity (93.5% similar) in 489 aa overlap (1-489:1-457)

               10        20        30        40        50        60
pF1KE0 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR
       ::::::::::::::::::                                ::::::::::
XP_016 KRREIAQTVGVTPQRIMV--------------------------------WFQNRRAKWR
              310                                       320        

              370       380       390       400       410       420
pF1KE0 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
      330       340       350       360       370       380        

              430       440       450       460       470       480
pF1KE0 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK
      390       400       410       420       430       440        

              490                                                  
pF1KE0 DGPCGSWGTR                                                  
       :::::::::                                                   
XP_016 DGPCGSWGTSITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQSPQPKLPYLPT
      450       460       470       480       490       500        




490 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:43:34 2016 done: Thu Nov  3 19:43:36 2016
 Total Scan time: 12.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]