FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0244, 134 aa
  1>>>pF1KE0244 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9851+/-0.000522; mu= 8.4418+/- 0.032
 mean_var=73.1796+/-14.588, 0's: 0 Z-trim(114.8): 7  B-trim: 0 in 0/55
 Lambda= 0.149927
 statistics sampled from 15374 (15379) to 15374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.472), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS83155.1 PMS2 gene_id:5395|Hs108|chr7           ( 756)  474 110.7 1.6e-24
CCDS5343.1 PMS2 gene_id:5395|Hs108|chr7            ( 862)  392 92.9 3.9e-19


>>CCDS83155.1 PMS2 gene_id:5395|Hs108|chr7                (756 aa)
 initn: 471 init1: 471 opt: 474  Z-score: 553.7  bits: 110.7 E(32554): 1.6e-24
Smith-Waterman score: 474; 62.4% identity (76.0% similar) in 125 aa overlap (1-123:1-125)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
       ::::::::::::::::::::.::::::::.:::.::::::::::.::::::::.::::::
CCDS83 MWGRRRKLRRLNDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
               10        20        30        40        50        60

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
CCDS83 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
               70        80        90       100       110       120

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
CCDS83 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
              130       140       150       160       170       180

>>CCDS5343.1 PMS2 gene_id:5395|Hs108|chr7                 (862 aa)
 initn: 383 init1: 383 opt: 392  Z-score: 456.9  bits: 92.9 E(32554): 3.9e-19
Smith-Waterman score: 392; 58.3% identity (73.9% similar) in 115 aa overlap (11-123:117-231)

                                   10        20        30        40
pF1KE0                     MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQK
                                     :.::::::::.::::::::.:::.::::::
CCDS53 HHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQK
         90       100       110       120       130       140      

               50        60        70        80        90          
pF1KE0 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ-
       ::::.::::::::.:::::::::::::::::::. : .  ..   : .  :  .    : 
CCDS53 TPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQL
        150       160       170       180       190       200      

      100       110       120       130                            
pF1KE0 -PAKLTPRSTPPHPCSLEDNVITVFSSVKNGPGSSR                        
         .:  :        :...:. .::                                   
CCDS53 GQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNL
        210       220       230       240       250       260      




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:32:36 2016 done: Thu Nov  3 19:32:36 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]