FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0254, 326 aa
  1>>>pF1KE0254 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3125+/-0.000963; mu= 16.4652+/- 0.058
 mean_var=68.3611+/-13.506, 0's: 0 Z-trim(104.5): 14  B-trim: 0 in 0/48
 Lambda= 0.155121
 statistics sampled from 7950 (7955) to 7950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.244), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS5142.2 AKAP7 gene_id:9465|Hs108|chr6           ( 348) 2124 484.3 5.8e-137
CCDS5144.1 AKAP7 gene_id:9465|Hs108|chr6           ( 104)  416 101.8 2.5e-22
CCDS5143.1 AKAP7 gene_id:9465|Hs108|chr6           (  81)  413 101.1 3.2e-22


>>CCDS5142.2 AKAP7 gene_id:9465|Hs108|chr6                (348 aa)
 initn: 2124 init1: 2124 opt: 2124  Z-score: 2572.4  bits: 484.3 E(32554): 5.8e-137
Smith-Waterman score: 2124; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:23-348)

                                     10        20        30        
pF1KE0                       MSEEFEANTMDSLVDMPFATVDIQDDCGITDEPQINLK
                             ::::::::::::::::::::::::::::::::::::::
CCDS51 MERPEAGGINSNECENVSRKKKMSEEFEANTMDSLVDMPFATVDIQDDCGITDEPQINLK
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KE0 RSQENEWVKSDQVKKRKKKRKDYQPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RSQENEWVKSDQVKKRKKKRKDYQPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAM
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE0 VSDGSFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VSDGSFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGF
              130       140       150       160       170       180

      160       170       180       190       200       210        
pF1KE0 VKLAEGDHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFMKLSKSPWLRKNGVKKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VKLAEGDHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFMKLSKSPWLRKNGVKKID
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KE0 PDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSIVIGEKNGGEPDDAELVRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSIVIGEKNGGEPDDAELVRLS
              250       260       270       280       290       300

      280       290       300       310       320      
pF1KE0 KRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
              310       320       330       340        

>>CCDS5144.1 AKAP7 gene_id:9465|Hs108|chr6                (104 aa)
 initn: 416 init1: 416 opt: 416  Z-score: 514.4  bits: 101.8 E(32554): 2.5e-22
Smith-Waterman score: 416; 100.0% identity (100.0% similar) in 65 aa overlap (262-326:40-104)

             240       250       260       270       280       290 
pF1KE0 EEILYRIDLCSMLKKKQSNGYYHCESSIVIGEKNGGEPDDAELVRLSKRLVENAVLKAVQ
                                     ::::::::::::::::::::::::::::::
CCDS51 SRDEGKISELESSSSAVLQRYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ
      10        20        30        40        50        60         

             300       310       320      
pF1KE0 QYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
       :::::::::::::::::::::::::::::::::::
CCDS51 QYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
      70        80        90       100    

>>CCDS5143.1 AKAP7 gene_id:9465|Hs108|chr6                (81 aa)
 initn: 413 init1: 413 opt: 413  Z-score: 512.3  bits: 101.1 E(32554): 3.2e-22
Smith-Waterman score: 413; 98.5% identity (100.0% similar) in 66 aa overlap (261-326:16-81)

              240       250       260       270       280       290
pF1KE0 GEEILYRIDLCSMLKKKQSNGYYHCESSIVIGEKNGGEPDDAELVRLSKRLVENAVLKAV
                                     :.::::::::::::::::::::::::::::
CCDS51                MGQLCCFPFSRDEGKISEKNGGEPDDAELVRLSKRLVENAVLKAV
                              10        20        30        40     

              300       310       320      
pF1KE0 QQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
       ::::::::::::::::::::::::::::::::::::
CCDS51 QQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK
          50        60        70        80 




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:55:52 2016 done: Thu Nov  3 18:55:53 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]