FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0258, 138 aa
  1>>>pF1KE0258 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5702+/-0.000739; mu= 1.0020+/- 0.045
 mean_var=267.9332+/-54.372, 0's: 0 Z-trim(119.3): 2  B-trim: 187 in 1/53
 Lambda= 0.078354
 statistics sampled from 20525 (20527) to 20525 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.876), E-opt: 0.2 (0.631), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS14071.1 PRR34 gene_id:55267|Hs108|chr22        ( 138) 1021 126.2 6.2e-30


>>CCDS14071.1 PRR34 gene_id:55267|Hs108|chr22             (138 aa)
 initn: 1021 init1: 1021 opt: 1021  Z-score: 650.9  bits: 126.2 E(32554): 6.2e-30
Smith-Waterman score: 1021; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE0 MPASATAAWHCPPLCLPPLPASAPTSPPNPATRPAPGPGRRARCPQSAHPAPTRGALTFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPASATAAWHCPPLCLPPLPASAPTSPPNPATRPAPGPGRRARCPQSAHPAPTRGALTFW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 APGSWPRVLLVPRSPGPVLRAPRLPHPAARARRRAWHGARLPGSPARAGRTFQRGLVSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 APGSWPRVLLVPRSPGPVLRAPRLPHPAARARRRAWHGARLPGSPARAGRTFQRGLVSNS
               70        80        90       100       110       120

              130        
pF1KE0 WAHAIFLPRPPNVLELQV
       ::::::::::::::::::
CCDS14 WAHAIFLPRPPNVLELQV
              130        




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:46:24 2016 done: Thu Nov  3 18:46:24 2016
 Total Scan time:  2.090 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]