FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0260, 98 aa
  1>>>pF1KE0260 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2423+/-0.000304; mu= 9.0321+/- 0.019
 mean_var=58.4439+/-11.623, 0's: 0 Z-trim(117.9): 5  B-trim: 220 in 1/48
 Lambda= 0.167766
 statistics sampled from 30267 (30272) to 30267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.355), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(85289)
NP_009212 (OMIM: 603163) scrapie-responsive protei (  98)  707 178.7 1.3e-45
NP_001316526 (OMIM: 603163) scrapie-responsive pro (  98)  707 178.7 1.3e-45
XP_016863167 (OMIM: 603163) PREDICTED: scrapie-res ( 135)  707 178.7 1.8e-45
XP_011529880 (OMIM: 603163) PREDICTED: scrapie-res ( 137)  707 178.7 1.8e-45


>>NP_009212 (OMIM: 603163) scrapie-responsive protein 1   (98 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 939.6  bits: 178.7 E(85289): 1.3e-45
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE0 MKLMVLVFTIGLTLLLGVQAMPANRLSCYRKILKDHNCHNLPEGVADLTQIDVNVQDHFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MKLMVLVFTIGLTLLLGVQAMPANRLSCYRKILKDHNCHNLPEGVADLTQIDVNVQDHFW
               10        20        30        40        50        60

               70        80        90        
pF1KE0 DGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNNQ
       ::::::::::::::::::::::::::::::::::::::
NP_009 DGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNNQ
               70        80        90        

>>NP_001316526 (OMIM: 603163) scrapie-responsive protein  (98 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 939.6  bits: 178.7 E(85289): 1.3e-45
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE0 MKLMVLVFTIGLTLLLGVQAMPANRLSCYRKILKDHNCHNLPEGVADLTQIDVNVQDHFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLMVLVFTIGLTLLLGVQAMPANRLSCYRKILKDHNCHNLPEGVADLTQIDVNVQDHFW
               10        20        30        40        50        60

               70        80        90        
pF1KE0 DGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNNQ
       ::::::::::::::::::::::::::::::::::::::
NP_001 DGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNNQ
               70        80        90        

>>XP_016863167 (OMIM: 603163) PREDICTED: scrapie-respons  (135 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 937.4  bits: 178.7 E(85289): 1.8e-45
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:38-135)

                                             10        20        30
pF1KE0                               MKLMVLVFTIGLTLLLGVQAMPANRLSCYR
                                     ::::::::::::::::::::::::::::::
XP_016 WKFWRKGNDTPFIPGKTNHLPDVHKGPKAKMKLMVLVFTIGLTLLLGVQAMPANRLSCYR
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KE0 KILKDHNCHNLPEGVADLTQIDVNVQDHFWDGKGCEMICYCNFSELLCCPKDVFFGPKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KILKDHNCHNLPEGVADLTQIDVNVQDHFWDGKGCEMICYCNFSELLCCPKDVFFGPKIS
        70        80        90       100       110       120       

               
pF1KE0 FVIPCNNQ
       ::::::::
XP_016 FVIPCNNQ
       130     

>>XP_011529880 (OMIM: 603163) PREDICTED: scrapie-respons  (137 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 937.3  bits: 178.7 E(85289): 1.8e-45
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:40-137)

                                             10        20        30
pF1KE0                               MKLMVLVFTIGLTLLLGVQAMPANRLSCYR
                                     ::::::::::::::::::::::::::::::
XP_011 QKFWRKGNDTPFIPGKTNHLPDVHKGPKAKMKLMVLVFTIGLTLLLGVQAMPANRLSCYR
      10        20        30        40        50        60         

               40        50        60        70        80        90
pF1KE0 KILKDHNCHNLPEGVADLTQIDVNVQDHFWDGKGCEMICYCNFSELLCCPKDVFFGPKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KILKDHNCHNLPEGVADLTQIDVNVQDHFWDGKGCEMICYCNFSELLCCPKDVFFGPKIS
      70        80        90       100       110       120         

               
pF1KE0 FVIPCNNQ
       ::::::::
XP_011 FVIPCNNQ
     130       




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:39:30 2016 done: Thu Nov  3 18:39:30 2016
 Total Scan time:  4.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]