FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0261, 375 aa
  1>>>pF1KE0261 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3038+/-0.000945; mu= 4.6019+/- 0.057
 mean_var=220.2957+/-43.687, 0's: 0 Z-trim(112.3): 20  B-trim: 104 in 1/54
 Lambda= 0.086411
 statistics sampled from 13048 (13058) to 13048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.401), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS44245.1 GPATCH4 gene_id:54865|Hs108|chr1       ( 375) 2503 324.6   9e-89
CCDS1146.1 GPATCH4 gene_id:54865|Hs108|chr1        ( 370) 2428 315.2 5.8e-86


>>CCDS44245.1 GPATCH4 gene_id:54865|Hs108|chr1            (375 aa)
 initn: 2503 init1: 2503 opt: 2503  Z-score: 1707.3  bits: 324.6 E(32554): 9e-89
Smith-Waterman score: 2503; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE0 MFPRSGPSNDEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFPRSGPSNDEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TSGGEKPNKDLESCSDDDNQGSKSPKILTDEMLLQACEGRTAHKAARLGITMKAKLARLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSGGEKPNKDLESCSDDDNQGSKSPKILTDEMLLQACEGRTAHKAARLGITMKAKLARLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASERNDADEKHPEHAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASERNDADEKHPEHAEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDAAGTSGLGELNSREQTNQSLRKGKKKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDAAGTSGLGELNSREQTNQSLRKGKKKKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 WHHEEEKMGVLEEGGKGKEAAGSVRTEEVESRAYADPCSRRKKRQQQEEEDLNLEDRGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WHHEEEKMGVLEEGGKGKEAAGSVRTEEVESRAYADPCSRRKKRQQQEEEDLNLEDRGEE
              310       320       330       340       350       360

              370     
pF1KE0 TFRWWNQGSREQSMQ
       :::::::::::::::
CCDS44 TFRWWNQGSREQSMQ
              370     

>>CCDS1146.1 GPATCH4 gene_id:54865|Hs108|chr1             (370 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1656.8  bits: 315.2 E(32554): 5.8e-86
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 365 aa overlap (11-375:6-370)

               10        20        30        40        50        60
pF1KE0 MFPRSGPSNDEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11      MNVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE0 PAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATL
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 TSGGEKPNKDLESCSDDDNQGSKSPKILTDEMLLQACEGRTAHKAARLGITMKAKLARLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSGGEKPNKDLESCSDDDNQGSKSPKILTDEMLLQACEGRTAHKAARLGITMKAKLARLE
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KE0 AQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASERNDADEKHPEHAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AQEQAFLARLKGQDPGAPQLQSESKPPKKKKKKRRQKEEEEATASERNDADEKHPEHAEQ
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KE0 NIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDAAGTSGLGELNSREQTNQSLRKGKKKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDAAGTSGLGELNSREQTNQSLRKGKKKKR
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KE0 WHHEEEKMGVLEEGGKGKEAAGSVRTEEVESRAYADPCSRRKKRQQQEEEDLNLEDRGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WHHEEEKMGVLEEGGKGKEAAGSVRTEEVESRAYADPCSRRKKRQQQEEEDLNLEDRGEE
         300       310       320       330       340       350     

              370     
pF1KE0 TFRWWNQGSREQSMQ
       :::::::::::::::
CCDS11 TFRWWNQGSREQSMQ
         360       370




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:38:11 2016 done: Thu Nov  3 18:38:12 2016
 Total Scan time:  3.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]