FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0262, 151 aa 1>>>pF1KE0262 151 - 151 aa - 151 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5679+/-0.000316; mu= 10.4061+/- 0.020 mean_var=65.0753+/-13.313, 0's: 0 Z-trim(116.3): 2 B-trim: 875 in 1/54 Lambda= 0.158989 statistics sampled from 27301 (27303) to 27301 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.32), width: 16 Scan time: 4.980 The best scores are: opt bits E(85289) NP_005708 (OMIM: 604227) actin-related protein 2/3 ( 151) 965 229.5 1.6e-60 NP_001257368 (OMIM: 604227) actin-related protein ( 154) 943 224.5 5.3e-59 >>NP_005708 (OMIM: 604227) actin-related protein 2/3 com (151 aa) initn: 965 init1: 965 opt: 965 Z-score: 1207.6 bits: 229.5 E(85289): 1.6e-60 Smith-Waterman score: 965; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151) 10 20 30 40 50 60 pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 70 80 90 100 110 120 130 140 150 pF1KE0 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV ::::::::::::::::::::::::::::::: NP_005 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 130 140 150 >>NP_001257368 (OMIM: 604227) actin-related protein 2/3 (154 aa) initn: 945 init1: 639 opt: 943 Z-score: 1180.2 bits: 224.5 E(85289): 5.3e-59 Smith-Waterman score: 943; 97.4% identity (98.1% similar) in 154 aa overlap (1-151:1-154) 10 20 30 40 50 pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ---GNMTAALQA :::::::::::::::::::::::::::::::::::::::::::::::. ::::::::: NP_001 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRHSITGNMTAALQA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE0 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 70 80 90 100 110 120 120 130 140 150 pF1KE0 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV :::::::::::::::::::::::::::::::::: NP_001 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 130 140 150 151 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 18:36:40 2016 done: Thu Nov 3 18:36:41 2016 Total Scan time: 4.980 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]