FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0262, 151 aa
  1>>>pF1KE0262 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5679+/-0.000316; mu= 10.4061+/- 0.020
 mean_var=65.0753+/-13.313, 0's: 0 Z-trim(116.3): 2  B-trim: 875 in 1/54
 Lambda= 0.158989
 statistics sampled from 27301 (27303) to 27301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.32), width:  16
 Scan time:  4.980

The best scores are:                                      opt bits E(85289)
NP_005708 (OMIM: 604227) actin-related protein 2/3 ( 151)  965 229.5 1.6e-60
NP_001257368 (OMIM: 604227) actin-related protein  ( 154)  943 224.5 5.3e-59


>>NP_005708 (OMIM: 604227) actin-related protein 2/3 com  (151 aa)
 initn: 965 init1: 965 opt: 965  Z-score: 1207.6  bits: 229.5 E(85289): 1.6e-60
Smith-Waterman score: 965; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
               70        80        90       100       110       120

              130       140       150 
pF1KE0 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
       :::::::::::::::::::::::::::::::
NP_005 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
              130       140       150 

>>NP_001257368 (OMIM: 604227) actin-related protein 2/3   (154 aa)
 initn: 945 init1: 639 opt: 943  Z-score: 1180.2  bits: 224.5 E(85289): 5.3e-59
Smith-Waterman score: 943; 97.4% identity (98.1% similar) in 154 aa overlap (1-151:1-154)

               10        20        30        40           50       
pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ---GNMTAALQA
       :::::::::::::::::::::::::::::::::::::::::::::::.   :::::::::
NP_001 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRHSITGNMTAALQA
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE0 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
               70        80        90       100       110       120

       120       130       140       150 
pF1KE0 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV
       ::::::::::::::::::::::::::::::::::
NP_001 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV
              130       140       150    




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:36:40 2016 done: Thu Nov  3 18:36:41 2016
 Total Scan time:  4.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]