Result of FASTA (omim) for
pF1KE0282
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0282, 432 aa
1>>>pF1KE0282 432 - 432 aa - 432 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.0410+/-0.000575; mu= -17.8369+/- 0.036
mean_var=614.0952+/-123.106, 0's: 0 Z-trim(120.3): 248 B-trim: 0 in 0/56
Lambda= 0.051755
statistics sampled from 35135 (35442) to 35135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.416), width: 16
Scan time: 6.700
The best scores are: opt bits E(85289)
NP_006098 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 2810 224.8 3.3e-58
NP_057508 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 2810 224.8 3.3e-58
XP_005257506 (OMIM: 609434) PREDICTED: luc7-like p ( 472) 2770 221.9 2.8e-57
NP_001317259 (OMIM: 609434) luc7-like protein 3 is ( 489) 2770 221.9 2.8e-57
XP_005257509 (OMIM: 609434) PREDICTED: luc7-like p ( 442) 2501 201.8 2.9e-51
XP_006722006 (OMIM: 609434) PREDICTED: luc7-like p ( 413) 2236 182.0 2.5e-45
NP_057103 (OMIM: 613056) putative RNA-binding prot ( 392) 849 78.4 3.7e-14
NP_001231514 (OMIM: 613056) putative RNA-binding p ( 389) 824 76.5 1.3e-13
NP_001257572 (OMIM: 613056) putative RNA-binding p ( 391) 819 76.1 1.7e-13
NP_958815 (OMIM: 607782) putative RNA-binding prot ( 371) 736 69.9 1.2e-11
NP_060502 (OMIM: 607782) putative RNA-binding prot ( 325) 708 67.8 4.8e-11
NP_001307155 (OMIM: 607782) putative RNA-binding p ( 325) 708 67.8 4.8e-11
XP_005255484 (OMIM: 607782) PREDICTED: putative RN ( 318) 619 61.1 4.7e-09
XP_016878926 (OMIM: 607782) PREDICTED: putative RN ( 318) 619 61.1 4.7e-09
NP_001317349 (OMIM: 607782) putative RNA-binding p ( 272) 591 58.9 1.8e-08
XP_016878927 (OMIM: 607782) PREDICTED: putative RN ( 285) 528 54.3 4.9e-07
XP_005255486 (OMIM: 607782) PREDICTED: putative RN ( 285) 528 54.3 4.9e-07
XP_011520863 (OMIM: 607782) PREDICTED: putative RN ( 338) 528 54.3 5.5e-07
XP_016878929 (OMIM: 607782) PREDICTED: putative RN ( 239) 500 52.1 1.8e-06
XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 457 49.3 3.3e-05
XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 457 49.5 4e-05
NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 457 49.5 4e-05
NP_001310464 (OMIM: 609268) splicing regulatory gl ( 358) 391 44.1 0.00068
XP_016864545 (OMIM: 609268) PREDICTED: splicing re ( 359) 387 43.8 0.00084
NP_001310463 (OMIM: 609268) splicing regulatory gl ( 359) 387 43.8 0.00084
NP_001257421 (OMIM: 609268) splicing regulatory gl ( 507) 391 44.3 0.00086
NP_001310458 (OMIM: 609268) splicing regulatory gl ( 623) 391 44.4 0.00099
NP_001310456 (OMIM: 609268) splicing regulatory gl ( 508) 387 44.0 0.0011
NP_631907 (OMIM: 609268) splicing regulatory gluta ( 508) 387 44.0 0.0011
XP_011541473 (OMIM: 609268) PREDICTED: splicing re ( 508) 387 44.0 0.0011
NP_001070667 (OMIM: 609268) splicing regulatory gl ( 624) 387 44.1 0.0012
XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 381 44.1 0.0031
NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 381 44.1 0.0031
NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 381 44.1 0.0032
NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 381 44.1 0.0032
NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 381 44.1 0.0032
NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 381 44.1 0.0032
XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 381 44.1 0.0032
XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 381 44.1 0.0032
XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 381 44.1 0.0032
XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 381 44.1 0.0032
XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 381 44.1 0.0032
NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 381 44.1 0.0032
XP_005266364 (OMIM: 616453) PREDICTED: zinc finger (1696) 381 44.1 0.0033
XP_005266361 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
XP_016875965 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
XP_005266358 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
XP_005266362 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
XP_005266359 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
XP_016875964 (OMIM: 616453) PREDICTED: zinc finger (1697) 381 44.1 0.0033
>>NP_006098 (OMIM: 609434) luc7-like protein 3 isoform 1 (432 aa)
initn: 2810 init1: 2810 opt: 2810 Z-score: 1166.0 bits: 224.8 E(85289): 3.3e-58
Smith-Waterman score: 2810; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
370 380 390 400 410 420
430
pF1KE0 EDIKSEGDTQSN
::::::::::::
NP_006 EDIKSEGDTQSN
430
>>NP_057508 (OMIM: 609434) luc7-like protein 3 isoform 1 (432 aa)
initn: 2810 init1: 2810 opt: 2810 Z-score: 1166.0 bits: 224.8 E(85289): 3.3e-58
Smith-Waterman score: 2810; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
370 380 390 400 410 420
430
pF1KE0 EDIKSEGDTQSN
::::::::::::
NP_057 EDIKSEGDTQSN
430
>>XP_005257506 (OMIM: 609434) PREDICTED: luc7-like prote (472 aa)
initn: 2770 init1: 2770 opt: 2770 Z-score: 1149.4 bits: 221.9 E(85289): 2.8e-57
Smith-Waterman score: 2770; 100.0% identity (100.0% similar) in 426 aa overlap (1-426:1-426)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
370 380 390 400 410 420
430
pF1KE0 EDIKSEGDTQSN
::::::
XP_005 EDIKSEVQRKYAQMKMELSRVRRHTKASSEGKDSVVLQNILRTTVRRFLEEY
430 440 450 460 470
>>NP_001317259 (OMIM: 609434) luc7-like protein 3 isofor (489 aa)
initn: 2770 init1: 2770 opt: 2770 Z-score: 1149.3 bits: 221.9 E(85289): 2.8e-57
Smith-Waterman score: 2770; 100.0% identity (100.0% similar) in 426 aa overlap (1-426:1-426)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
370 380 390 400 410 420
430
pF1KE0 EDIKSEGDTQSN
::::::
NP_001 EDIKSEVQRKYAQMKMELSRVRRHTKASSEGKDSVVLQNILRYIVLSQLFCSRLVPPLVC
430 440 450 460 470 480
>>XP_005257509 (OMIM: 609434) PREDICTED: luc7-like prote (442 aa)
initn: 2827 init1: 2489 opt: 2501 Z-score: 1041.2 bits: 201.8 E(85289): 2.9e-51
Smith-Waterman score: 2501; 94.1% identity (96.6% similar) in 410 aa overlap (1-410:1-407)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 YKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTS
::::::::::::::::::: .: . : . :: .. ...:.:.:
XP_005 YKHRSKSRDREQDRKSKEKVQRKYAQMKMEL---SRVRRHTKASSEGKDSVVLQNILRYI
370 380 390 400 410
430
pF1KE0 EDIKSEGDTQSN
XP_005 VLSQLFCSRLVPPLVCLFGNYRPHL
420 430 440
>>XP_006722006 (OMIM: 609434) PREDICTED: luc7-like prote (413 aa)
initn: 2236 init1: 2236 opt: 2236 Z-score: 934.7 bits: 182.0 E(85289): 2.5e-45
Smith-Waterman score: 2236; 100.0% identity (100.0% similar) in 350 aa overlap (77-426:1-350)
50 60 70 80 90 100
pF1KE0 LFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHAR
::::::::::::::::::::::::::::::
XP_006 MKVGYERDFLRYLQSLLAEVERRIRRGHAR
10 20 30
110 120 130 140 150 160
pF1KE0 LALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKAT
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 VEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE0 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSR
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE0 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTE
280 290 300 310 320 330
410 420 430
pF1KE0 SKESDTKNEVNGTSEDIKSEGDTQSN
::::::::::::::::::::
XP_006 SKESDTKNEVNGTSEDIKSEVQRKYAQMKMELSRVRRHTKASSEGKDSVVLQNILRYIVL
340 350 360 370 380 390
>>NP_057103 (OMIM: 613056) putative RNA-binding protein (392 aa)
initn: 809 init1: 361 opt: 849 Z-score: 375.2 bits: 78.4 E(85289): 3.7e-14
Smith-Waterman score: 849; 37.7% identity (71.6% similar) in 387 aa overlap (7-390:10-384)
10 20 30 40 50
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGP
.::.::: .:. : :. .... . ::: .: . :: .....:: :::
NP_057 MSAQAQMRAMLDQLMGTSRD--GDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSG
: :.:: :: .:: .:. . .: : . .:::..:. .:: . .. ::: .:.. :.
NP_057 CLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK-EERELLRSTT
.:. . :... :...: :: ..:.::.::.:::.: .: ::. . ..:: .
NP_057 VAAKA----ERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRK
... . . :.....:::::.:.: . : . :. ::. :: :.:. .:. .::::. . .
NP_057 NSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 RTEEPDRDERLKK-EKQEREEREK-EREREREERERKRRREEEEREKERARDRERRKRSR
. :. .. ::::. :..::::::: .: : . . .. : .:..:.. :. .:::..:.:
NP_057 KQEKRNQ-ERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 SRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSK
:.::.. . :. ::: ...::::..: : :::: : ::. :: :.: :..: :
NP_057 SKSREKRH---RHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSS-KERFRDQDLA-SC
300 310 320 330 340
360 370 380 390 400 410
pF1KE0 SRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKN
.:::.: . ..:::.. ..: :. . :.:..::
NP_057 DRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
350 360 370 380 390
420 430
pF1KE0 EVNGTSEDIKSEGDTQSN
>>NP_001231514 (OMIM: 613056) putative RNA-binding prote (389 aa)
initn: 809 init1: 361 opt: 824 Z-score: 365.2 bits: 76.5 E(85289): 1.3e-13
Smith-Waterman score: 824; 36.6% identity (71.2% similar) in 393 aa overlap (1-390:1-381)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
:. .:: ...: .. .. : :. .... . ::: .: . :: .....:: ::: : :
NP_001 MVIHSQL-KKIQGASERMG-DTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLK
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
.:: :: .:: .:. . .: : . .:::..:. .:: . .. ::: .:.. :. .:.
NP_001 VHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAA
60 70 80 90 100 110
130 140 150 160 170
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK-EERELLRSTTSTI
. :... :...: :: ..:.::.::.:::.: .: ::. . ..:: . ...
NP_001 KA----ERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSM
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTE
. . :.....:::::.:.: . : . :. ::. :: :.:. .:. .::::. . .. :
NP_001 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 EPDRDERLKK-EKQEREEREK-EREREREERERKRRREEEEREKERARDRERRKRSRSRS
. .. ::::. :..::::::: .: : . . .. : .:..:.. :. .:::..:.::.:
NP_001 KRNQ-ERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 RHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD
:.. . :. ::: ...::::..: : :::: : ::. :: :.: :..: : .::
NP_001 REKRH---RHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSS-KERFRDQDLA-SCDRD
300 310 320 330 340
360 370 380 390 400 410
pF1KE0 RKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVN
:.: . ..:::.. ..: :. . :.:..::
NP_001 RSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
350 360 370 380
420 430
pF1KE0 GTSEDIKSEGDTQSN
>>NP_001257572 (OMIM: 613056) putative RNA-binding prote (391 aa)
initn: 809 init1: 361 opt: 819 Z-score: 363.1 bits: 76.1 E(85289): 1.7e-13
Smith-Waterman score: 819; 37.5% identity (71.6% similar) in 373 aa overlap (21-390:21-383)
10 20 30 40 50 60
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
: :. .... . ::: .: . :: .....:: ::: : :
NP_001 MPAYLNLQGSVRKAPHSPSRDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
.:: :: .:: .:. . .: : . .:::..:. .:: . .. ::: .:.. :. .:.
NP_001 VHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAA
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK-EERELLRSTTSTI
. :... :...: :: ..:.::.::.:::.: .: ::. . ..:: . ...
NP_001 KA----ERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSM
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTE
. . :.....:::::.:.: . : . :. ::. :: :.:. .:. .::::. . .. :
NP_001 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 EPDRDERLKK-EKQEREEREK-EREREREERERKRRREEEEREKERARDRERRKRSRSRS
. .. ::::. :..::::::: .: : . . .. : .:..:.. :. .:::..:.::.:
NP_001 KRNQ-ERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 RHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD
:.. . :. ::: ...::::..: : :::: : ::. :: :.: :..: : .::
NP_001 REKRH---RHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSS-KERFRDQDLA-SCDRD
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE0 RKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVN
:.: . ..:::.. ..: :. . :.:..::
NP_001 RSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
360 370 380 390
420 430
pF1KE0 GTSEDIKSEGDTQSN
>>NP_958815 (OMIM: 607782) putative RNA-binding protein (371 aa)
initn: 740 init1: 346 opt: 736 Z-score: 329.9 bits: 69.9 E(85289): 1.2e-11
Smith-Waterman score: 748; 36.0% identity (68.3% similar) in 375 aa overlap (7-380:10-367)
10 20 30 40 50
pF1KE0 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGP
:::.::: :. :: :. :.. . ::: .: :: .....:: :::
NP_958 MSAQAQMRALLDQLMGTARD--GDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSG
: :::: :: .:: .:. . .: : . .:.:..:: .:: . .. ::: .:.. :.
NP_958 CTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK-EERELLRSTT
... . ::.. :...: :: . :.::.::.:.:.: .. ::... ...: .
NP_958 VSAKA----EKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRK
... . . :.....:::::.:.: . : . :. ::. :: :.:. .:. ...:.. . .
NP_958 NSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 RTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSR
. :. ..:. ..:..::::: ..: : . .:. : ....:.. :. .::::: ::::
NP_958 KQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 SRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSR
:: : :. ::::.: :: .::. :::: . . .: :: : .: . ::. :
NP_958 SRDRHR---RHRSRSRSH----SRGHRRA-SRDRSAKYKFSR-ERASREESWESGRSE-R
300 310 320 330 340
360 370 380 390 400 410
pF1KE0 DRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEV
... .: : . .:.:.:::
NP_958 GPPDWRLES-SNGKMASRRSEEKEAGEI
350 360 370
432 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:52:17 2016 done: Mon Nov 7 20:52:18 2016
Total Scan time: 6.700 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]