FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0286, 69 aa
  1>>>pF1KE0286 69 - 69 aa - 69 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9719+/-0.000272; mu= 8.3636+/- 0.017
 mean_var=55.8965+/-11.332, 0's: 0 Z-trim(120.0): 15  B-trim: 1451 in 1/49
 Lambda= 0.171547
 statistics sampled from 34788 (34803) to 34788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.408), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(85289)
NP_001032588 (OMIM: 615243) beta-defensin 114 prec (  69)  499 130.6   2e-31
NP_061131 (OMIM: 606611) beta-defensin 103 precurs (  67)  122 37.3  0.0024


>>NP_001032588 (OMIM: 615243) beta-defensin 114 precurso  (69 aa)
 initn: 499 init1: 499 opt: 499  Z-score: 685.1  bits: 130.6 E(85289): 2e-31
Smith-Waterman score: 499; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)

               10        20        30        40        50        60
pF1KE0 MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTE
               10        20        30        40        50        60

                
pF1KE0 KLYEEDDMF
       :::::::::
NP_001 KLYEEDDMF
                

>>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [  (67 aa)
 initn: 139 init1:  74 opt: 122  Z-score: 181.0  bits: 37.3 E(85289): 0.0024
Smith-Waterman score: 122; 34.8% identity (57.6% similar) in 66 aa overlap (1-61:1-66)

               10         20           30         40        50     
pF1KE0 MRIFYYLHFLCYVTFI-LPATCTLVNADR---CTKRYGRCKR-DCLESEKQIDICSLPRK
       ::: : :  : .. .. .:.   ..:. .   :  : :::   .:: .:.::  ::   .
NP_061 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
               10        20        30        40        50        60

          60         
pF1KE0 ICCTEKLYEEDDMF
        :: .:        
NP_061 KCCRRKK       
                     




69 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:41:18 2016 done: Thu Nov  3 17:41:19 2016
 Total Scan time:  3.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]