Result of FASTA (ccds) for
pF1KE0304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0304, 489 aa
1>>>pF1KE0304 489 - 489 aa - 489 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8198+/-0.000908; mu= 10.1154+/- 0.054
mean_var=88.4090+/-17.628, 0's: 0 Z-trim(107.2): 20 B-trim: 0 in 0/50
Lambda= 0.136404
statistics sampled from 9451 (9462) to 9451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.291), width: 16
Scan time: 3.260
The best scores are: opt bits E(32554)
CCDS1594.1 SPRTN gene_id:83932|Hs108|chr1 ( 489) 3297 659.0 3.3e-189
CCDS31054.1 SPRTN gene_id:83932|Hs108|chr1 ( 250) 1701 344.9 6.2e-95
CCDS58066.1 SPRTN gene_id:83932|Hs108|chr1 ( 207) 740 155.7 4.4e-38
>>CCDS1594.1 SPRTN gene_id:83932|Hs108|chr1 (489 aa)
initn: 3297 init1: 3297 opt: 3297 Z-score: 3510.4 bits: 659.0 E(32554): 3.3e-189
Smith-Waterman score: 3297; 99.8% identity (99.8% similar) in 489 aa overlap (1-489:1-489)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS15 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
430 440 450 460 470 480
pF1KE0 IKVKSEESL
:::::::::
CCDS15 IKVKSEESL
>>CCDS31054.1 SPRTN gene_id:83932|Hs108|chr1 (250 aa)
initn: 1701 init1: 1701 opt: 1701 Z-score: 1817.9 bits: 344.9 E(32554): 6.2e-95
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
CCDS31 TFVYILLIFM
250
>>CCDS58066.1 SPRTN gene_id:83932|Hs108|chr1 (207 aa)
initn: 734 init1: 734 opt: 740 Z-score: 797.2 bits: 155.7 E(32554): 4.4e-38
Smith-Waterman score: 1307; 82.0% identity (82.0% similar) in 239 aa overlap (1-239:1-196)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVE-------------
70 80 90 100
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::
CCDS58 ------------------------------VYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
110 120 130
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
CCDS58 TFVYILLIFM
200
489 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:32:59 2016 done: Thu Nov 3 16:32:59 2016
Total Scan time: 3.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]