Result of FASTA (omim) for
pF1KE0304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0304, 489 aa
1>>>pF1KE0304 489 - 489 aa - 489 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0503+/-0.000387; mu= 9.0850+/- 0.024
mean_var=99.9377+/-20.395, 0's: 0 Z-trim(114.5): 29 B-trim: 18 in 1/49
Lambda= 0.128295
statistics sampled from 24372 (24393) to 24372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.286), width: 16
Scan time: 8.820
The best scores are: opt bits E(85289)
NP_114407 (OMIM: 616086,616200) sprT-like domain-c ( 489) 3297 621.0 2.4e-177
XP_006711881 (OMIM: 616086,616200) PREDICTED: sprT ( 446) 2268 430.5 4.7e-120
XP_011542591 (OMIM: 616086,616200) PREDICTED: sprT ( 361) 2265 429.9 5.7e-120
NP_001010984 (OMIM: 616086,616200) sprT-like domai ( 250) 1701 325.5 1.1e-88
NP_001248391 (OMIM: 616086,616200) sprT-like domai ( 207) 740 147.6 3.2e-35
>>NP_114407 (OMIM: 616086,616200) sprT-like domain-conta (489 aa)
initn: 3297 init1: 3297 opt: 3297 Z-score: 3305.0 bits: 621.0 E(85289): 2.4e-177
Smith-Waterman score: 3297; 99.8% identity (99.8% similar) in 489 aa overlap (1-489:1-489)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_114 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
430 440 450 460 470 480
pF1KE0 IKVKSEESL
:::::::::
NP_114 IKVKSEESL
>>XP_006711881 (OMIM: 616086,616200) PREDICTED: sprT-lik (446 aa)
initn: 2268 init1: 2268 opt: 2268 Z-score: 2276.4 bits: 430.5 E(85289): 4.7e-120
Smith-Waterman score: 2903; 91.0% identity (91.0% similar) in 489 aa overlap (1-489:1-446)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
:::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVE-------------
70 80 90 100
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::
XP_006 ------------------------------VYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
110 120 130
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_006 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE0 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE0 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE0 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
380 390 400 410 420 430
pF1KE0 IKVKSEESL
:::::::::
XP_006 IKVKSEESL
440
>>XP_011542591 (OMIM: 616086,616200) PREDICTED: sprT-lik (361 aa)
initn: 2265 init1: 2265 opt: 2265 Z-score: 2274.8 bits: 429.9 E(85289): 5.7e-120
Smith-Waterman score: 2265; 99.7% identity (99.7% similar) in 339 aa overlap (151-489:23-361)
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::
XP_011 MAAEPVISLRPLTSSESTFYTQVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
10 20 30 40 50
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
60 70 80 90 100 110
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI
120 130 140 150 160 170
310 320 330 340 350 360
pF1KE0 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
180 190 200 210 220 230
370 380 390 400 410 420
pF1KE0 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
240 250 260 270 280 290
430 440 450 460 470 480
pF1KE0 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
300 310 320 330 340 350
pF1KE0 IKVKSEESL
:::::::::
XP_011 IKVKSEESL
360
>>NP_001010984 (OMIM: 616086,616200) sprT-like domain-co (250 aa)
initn: 1701 init1: 1701 opt: 1701 Z-score: 1713.3 bits: 325.5 E(85289): 1.1e-88
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
NP_001 TFVYILLIFM
250
>>NP_001248391 (OMIM: 616086,616200) sprT-like domain-co (207 aa)
initn: 734 init1: 734 opt: 740 Z-score: 753.3 bits: 147.6 E(85289): 3.2e-35
Smith-Waterman score: 1307; 82.0% identity (82.0% similar) in 239 aa overlap (1-239:1-196)
10 20 30 40 50 60
pF1KE0 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVE-------------
70 80 90 100
130 140 150 160 170 180
pF1KE0 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
::::::::::::::::::::::::::::::
NP_001 ------------------------------VYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
110 120 130
190 200 210 220 230 240
pF1KE0 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE0 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRLNSKI
NP_001 TFVYILLIFM
200
489 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:33:00 2016 done: Thu Nov 3 16:33:01 2016
Total Scan time: 8.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]