FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0312, 525 aa
  1>>>pF1KE0312 525 - 525 aa - 525 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0840+/-0.000861; mu= 10.9134+/- 0.052
 mean_var=132.8706+/-26.609, 0's: 0 Z-trim(111.8): 12  B-trim: 535 in 1/51
 Lambda= 0.111265
 statistics sampled from 12655 (12658) to 12655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.389), width:  16
 Scan time:  3.750

The best scores are:                                      opt bits E(32554)
CCDS290.1 GPATCH3 gene_id:63906|Hs108|chr1         ( 525) 3595 588.5 6.4e-168


>>CCDS290.1 GPATCH3 gene_id:63906|Hs108|chr1              (525 aa)
 initn: 3595 init1: 3595 opt: 3595  Z-score: 3128.2  bits: 588.5 E(32554): 6.4e-168
Smith-Waterman score: 3595; 99.4% identity (99.8% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KE0 MALPGEAEEEATVYLVVSGIPSVLRSAHLRSYFSQFREERGGGFLCSHYRHRPERAPPQA
       ::.::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS29 MAVPGEAEEEATVYLVVSGIPSVLRSAHLRSYFSQFREERGGGFLCFHYRHRPERAPPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 APNSALIPTDPAAEGQLLSQTSATDVRPLSTRDSTPIQTRTCCCVISVRGLAQAQRLIRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 APNSALIPTDPAAEGQLLSQTSATDVRPLSTRDSTPIQTRTCCCVISVRGLAQAQRLIRM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YSGRRWLDSHGTWLPGRCLIRRLRLPAEASGLGSFPFKTRKELQSWKAENEAFTLADLKQ
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS29 YSGRRWLDSHGTWLPGRCLIRRLRLPTEASGLGSFPFKTRKELQSWKAENEAFTLADLKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPELNPPVLMPRGNVGTPLRVFLELIRACRLPPRIITQLQLQFPKTGSSRRYGNVPFEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LPELNPPVLMPRGNVGTPLRVFLELIRACRLPPRIITQLQLQFPKTGSSRRYGNVPFEYE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DSETVEQEELVYTAEGEEIPQGTYLADIPASPCGEPEEEVGKEEEEESHSDEDDDRGEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DSETVEQEELVYTAEGEEIPQGTYLADIPASPCGEPEEEVGKEEEEESHSDEDDDRGEEW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ERHEALHEDVTGQERTTEQLFEEEIELKWEKGGSGLVFYTDAQFWQEEEGDFDEQTADDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ERHEALHEDVTGQERTTEQLFEEEIELKWEKGGSGLVFYTDAQFWQEEEGDFDEQTADDW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 DVDMSVYYDRDGGDKDARDSVQMRLEQRLRDGQEDGSVIERQVGTFERHTKGIGRKVMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DVDMSVYYDRDGGDKDARDSVQMRLEQRLRDGQEDGSVIERQVGTFERHTKGIGRKVMER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 QGWAEGQGLGCRCSGVPEALDSDGQHPRCKRGLGYHGEKLQPFGQLKRPRRNGLGLISTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QGWAEGQGLGCRCSGVPEALDSDGQHPRCKRGLGYHGEKLQPFGQLKRPRRNGLGLISTI
              430       440       450       460       470       480

              490       500       510       520     
pF1KE0 YDEPLPQDQTESLLRRQPPTSMKFRTDMAFVRGSSCASDSPSLPD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS29 YDEPLPQDQTESLLRRQPPTSMKFRTDMAFVRGSSCASDSPSLPD
              490       500       510       520     




525 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:16:08 2016 done: Thu Nov  3 16:16:08 2016
 Total Scan time:  3.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]