FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0322, 580 aa
  1>>>pF1KE0322 580 - 580 aa - 580 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7446+/-0.000808; mu= 9.4437+/- 0.049
 mean_var=182.0612+/-36.680, 0's: 0 Z-trim(114.5): 17  B-trim: 0 in 0/53
 Lambda= 0.095053
 statistics sampled from 15048 (15059) to 15048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.463), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(32554)
CCDS5687.1 C7orf43 gene_id:55262|Hs108|chr7        ( 580) 3936 552.0 7.4e-157
CCDS78261.1 C7orf43 gene_id:55262|Hs108|chr7       ( 311) 2107 301.0 1.5e-81


>>CCDS5687.1 C7orf43 gene_id:55262|Hs108|chr7             (580 aa)
 initn: 3936 init1: 3936 opt: 3936  Z-score: 2929.6  bits: 552.0 E(32554): 7.4e-157
Smith-Waterman score: 3936; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580)

               10        20        30        40        50        60
pF1KE0 MESQCDYSMYFPAVPLPPRAELAGDPGRYRALPRRNHLYLGETVRFLLVLRCRGGAGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MESQCDYSMYFPAVPLPPRAELAGDPGRYRALPRRNHLYLGETVRFLLVLRCRGGAGSGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GGGPGLGSRGAWAELATALAALASVSAGGGMPGGGGAGDQDSEPPGGGDPGGGGLFRGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GGGPGLGSRGAWAELATALAALASVSAGGGMPGGGGAGDQDSEPPGGGDPGGGGLFRGCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 APEVRDQGYLRLLQTRSPGETFRGEQSAFKAQVSTLLTLLPPPVLRCRQFTVAGKHLTVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 APEVRDQGYLRLLQTRSPGETFRGEQSAFKAQVSTLLTLLPPPVLRCRQFTVAGKHLTVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GCFPCPLNALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GCFPCPLNALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PSVRLDRPCFVMTASCKSPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PSVRLDRPCFVMTASCKSPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 ERRAMQAALDSVVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ERRAMQAALDSVVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 SHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAI
              490       500       510       520       530       540

              550       560       570       580
pF1KE0 TPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK
       ::::::::::::::::::::::::::::::::::::::::
CCDS56 TPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK
              550       560       570       580

>>CCDS78261.1 C7orf43 gene_id:55262|Hs108|chr7            (311 aa)
 initn: 2107 init1: 2107 opt: 2107  Z-score: 1577.6  bits: 301.0 E(32554): 1.5e-81
Smith-Waterman score: 2107; 100.0% identity (100.0% similar) in 311 aa overlap (270-580:1-311)

     240       250       260       270       280       290         
pF1KE0 LKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGT
                                     ::::::::::::::::::::::::::::::
CCDS78                               MPDGSVLLVDNVCHQSGEVSMGSFCRLPGT
                                             10        20        30

     300       310       320       330       340       350         
pF1KE0 SGCFPCPLNALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SGCFPCPLNALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYR
               40        50        60        70        80        90

     360       370       380       390       400       410         
pF1KE0 LPSVRLDRPCFVMTASCKSPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LPSVRLDRPCFVMTASCKSPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCE
              100       110       120       130       140       150

     420       430       440       450       460       470         
pF1KE0 EERRAMQAALDSVVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EERRAMQAALDSVVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTAS
              160       170       180       190       200       210

     480       490       500       510       520       530         
pF1KE0 VSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRA
              220       230       240       250       260       270

     540       550       560       570       580
pF1KE0 ITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK
       :::::::::::::::::::::::::::::::::::::::::
CCDS78 ITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK
              280       290       300       310 




580 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:03:26 2016 done: Thu Nov  3 16:03:26 2016
 Total Scan time:  4.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]