Result of FASTA (ccds) for
pF1KE0324
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0324, 618 aa
1>>>pF1KE0324 618 - 618 aa - 618 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1139+/-0.00119; mu= 21.0889+/- 0.073
mean_var=87.7791+/-17.930, 0's: 0 Z-trim(104.5): 117 B-trim: 494 in 2/48
Lambda= 0.136892
statistics sampled from 7782 (7916) to 7782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.243), width: 16
Scan time: 3.470
The best scores are: opt bits E(32554)
CCDS32612.1 RHOT1 gene_id:55288|Hs108|chr17 ( 618) 4138 828.0 0
CCDS74031.1 RHOT1 gene_id:55288|Hs108|chr17 ( 597) 4009 802.5 0
CCDS32611.1 RHOT1 gene_id:55288|Hs108|chr17 ( 659) 3906 782.2 0
CCDS74030.1 RHOT1 gene_id:55288|Hs108|chr17 ( 650) 3896 780.2 0
CCDS32610.1 RHOT1 gene_id:55288|Hs108|chr17 ( 691) 3896 780.2 0
CCDS10417.1 RHOT2 gene_id:89941|Hs108|chr16 ( 618) 2519 508.2 1.3e-143
>>CCDS32612.1 RHOT1 gene_id:55288|Hs108|chr17 (618 aa)
initn: 4138 init1: 4138 opt: 4138 Z-score: 4420.1 bits: 828.0 E(32554): 0
Smith-Waterman score: 4138; 99.8% identity (100.0% similar) in 618 aa overlap (1-618:1-618)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FLTEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS32 FLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFGA
550 560 570 580 590 600
610
pF1KE0 TVFAVLGFAMYKALLKQR
::::::::::::::::::
CCDS32 TVFAVLGFAMYKALLKQR
610
>>CCDS74031.1 RHOT1 gene_id:55288|Hs108|chr17 (597 aa)
initn: 4009 init1: 4009 opt: 4009 Z-score: 4282.6 bits: 802.5 E(32554): 0
Smith-Waterman score: 4009; 99.8% identity (100.0% similar) in 597 aa overlap (22-618:1-597)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
:::::::::::::::::::::::::::::::::::::::
CCDS74 MSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
10 20 30
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE0 FLTEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS74 FLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE0 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFGA
520 530 540 550 560 570
610
pF1KE0 TVFAVLGFAMYKALLKQR
::::::::::::::::::
CCDS74 TVFAVLGFAMYKALLKQR
580 590
>>CCDS32611.1 RHOT1 gene_id:55288|Hs108|chr17 (659 aa)
initn: 3906 init1: 3906 opt: 3906 Z-score: 4172.1 bits: 782.2 E(32554): 0
Smith-Waterman score: 3990; 93.5% identity (93.7% similar) in 650 aa overlap (1-609:1-650)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FLTEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS32 FLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
490 500 510 520 530 540
550 560 570 580
pF1KE0 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPH-------------------
:::::::::::::::::::::::::::::::::::::::::
CCDS32 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHARLRCMCTCNRCTFCICQN
550 560 570 580 590 600
590 600 610
pF1KE0 ----------------------VTQADLKSSTFWLRASFGATVFAVLGFAMYKALLKQR
::::::::::::::::::::::::::::
CCDS32 FLNSDLLQSVKNKIFTAVLNRHVTQADLKSSTFWLRASFGATVFAVLGFAMYKALLKQR
610 620 630 640 650
>>CCDS74030.1 RHOT1 gene_id:55288|Hs108|chr17 (650 aa)
initn: 4124 init1: 3896 opt: 3896 Z-score: 4161.5 bits: 780.2 E(32554): 0
Smith-Waterman score: 4064; 94.9% identity (95.1% similar) in 650 aa overlap (1-618:1-650)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FLTEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS74 FLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
490 500 510 520 530 540
550 560 570 580
pF1KE0 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYP--------------------
::::::::::::::::::::::::::::::::::::::::
CCDS74 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPEDHYRDRLSRDMGHTDRIEN
550 560 570 580 590 600
590 600 610
pF1KE0 ------------HVTQADLKSSTFWLRASFGATVFAVLGFAMYKALLKQR
::::::::::::::::::::::::::::::::::::::
CCDS74 LRKIWVFLKTALHVTQADLKSSTFWLRASFGATVFAVLGFAMYKALLKQR
610 620 630 640 650
>>CCDS32610.1 RHOT1 gene_id:55288|Hs108|chr17 (691 aa)
initn: 4124 init1: 3896 opt: 3896 Z-score: 4161.2 bits: 780.2 E(32554): 0
Smith-Waterman score: 3896; 99.8% identity (100.0% similar) in 580 aa overlap (1-580:1-580)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FLTEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS32 FLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFGA
::::::::::::::::::::::::::::::::::::::::
CCDS32 SPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPEDHYRDRLSRDMGHTDRIEN
550 560 570 580 590 600
610
pF1KE0 TVFAVLGFAMYKALLKQR
CCDS32 LRKIWVFLKTAFHARLRCMCTCNRCTFCICQNFLNSDLLQSVKNKIFTAVLNRHVTQADL
610 620 630 640 650 660
>>CCDS10417.1 RHOT2 gene_id:89941|Hs108|chr16 (618 aa)
initn: 2329 init1: 1665 opt: 2519 Z-score: 2692.1 bits: 508.2 E(32554): 1.3e-143
Smith-Waterman score: 2519; 60.0% identity (83.0% similar) in 622 aa overlap (1-618:1-618)
10 20 30 40 50 60
pF1KE0 MKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSE
:..::::::.:: .:::::::.:::.:::::::::::::::::::::::.::::::::::
CCDS10 MRRDVRILLLGEAQVGKTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKS
:::.::.:..:: .:::.:.:: :... .:.:. ..::::.: : . :.:.:::::::
CCDS10 AEQTDEELREEIHKANVVCVVYDVSEEATIEKIRTKWIPLVNGGTTQGPRVPIILVGNKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DLVEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKE
:: ::::..::::.:. :::::::::::::.:::::::::::::::::.::: :: :.
CCDS10 DLRSGSSMEAVLPIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 MKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDG
..::: .::::::..:::: : .:.: ::: ::. ::. :::::::::::.:: .... :
CCDS10 LRPACAQALTRIFRLSDQDLDQALSDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTE
: .. ::: :::::.::::::::::::::.::::::.: :.:: .:: ::...:: :.::
CCDS10 VREDRLTLDGFLFLNTLFIQRGRHETTWTILRRFGYSDALELTADYLSPLIHVPPGCSTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNNTVCTNERGWITYQ
::: .: :.: .:.::: ::: :::: ::..::.::: ::::.. :: : : : . .
CCDS10 LNHLGYQFVQRVFEKHDQDRDGALSPVELQSLFSVFPAAPWGPELPRTVRT-EAGRLPLH
310 320 330 340 350
370 380 390 400 410 420
pF1KE0 GFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFR
:.: ::::.:::::. :: .:::::: : ::. :: :.::::.:..: .: ::::.:.
CCDS10 GYLCQWTLVTYLDVRSCLGHLGYLGYPTLCEQD-QAHAITVTREKRLDQEKGQTQRSVLL
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE0 CNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESE
:.:.:... :::. :::.:::.: .: ::. .: ::.:: : ::::::.: ... .
CCDS10 CKVVGARGVGKSAFLQAFLGRGLGHQDT-REQPPGY-AIDTVQVNGQEKYLILCEVGTDG
420 430 440 450 460 470
490 500 510 520 530
pF1KE0 FL-TEAEIICDVVCLVYDVSNPKSLEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYS
.: : . :::.::..: :.:::. .:: ..:.:.::.. :::.:..:.:: : .
CCDS10 LLATSLDATCDVACLMFDGSDPKSFAHCASVYKHHYMDGQTPCLFVSSKADLPEGVAVSG
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE0 ISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYPHVTQADLKSSTFWLRASFG
::..:::::..: : :.: :: ::..:.::: .::...:.:. :.::::. .:
CCDS10 PSPAEFCRKHRLPAPVPFSCAGPAEPSTTIFTQLATMAAFPHLVHAELHPSSFWLRGLLG
540 550 560 570 580 590
600 610
pF1KE0 ---ATVFAVLGFAMYKALLKQR
:.: :::.:..:..:.:..
CCDS10 VVGAAVAAVLSFSLYRVLVKSQ
600 610
618 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:58:29 2016 done: Thu Nov 3 15:58:29 2016
Total Scan time: 3.470 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]