FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0329, 508 aa
  1>>>pF1KE0329 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5582+/-0.0011; mu= -0.3530+/- 0.066
 mean_var=274.3288+/-53.907, 0's: 0 Z-trim(111.9): 26  B-trim: 0 in 0/53
 Lambda= 0.077435
 statistics sampled from 12715 (12724) to 12715 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.391), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS42761.1 UBXN4 gene_id:23190|Hs108|chr2         ( 508) 3263 378.1 1.3e-104


>>CCDS42761.1 UBXN4 gene_id:23190|Hs108|chr2              (508 aa)
 initn: 3263 init1: 3263 opt: 3263  Z-score: 1991.7  bits: 378.1 E(32554): 1.3e-104
Smith-Waterman score: 3263; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KE0 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSNSFVAIKIDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSNSFVAIKIDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMHLLKSETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMHLLKSETS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VANGSQSESSVSTPSASFEPNNTCENSQSRNAELCEIPPTSDTKSDTATGGESAGHATSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VANGSQSESSVSTPSASFEPNNTCENSQSRNAELCEIPPTSDTKSDTATGGESAGHATSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRKTGKEMLDYKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRKTGKEMLDYKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARFAKTKEEVEAAKAAALLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARFAKTKEEVEAAKAAALLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KQAEMEVKRESYARERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KQAEMEVKRESYARERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 SLATMFPRREFTKEDYKKKLLDLELAPSASVVLLPAGRPTASIVHSSSGDIWTLLGTVLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLATMFPRREFTKEDYKKKLLDLELAPSASVVLLPAGRPTASIVHSSSGDIWTLLGTVLY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 PFLAIWRLISNFLFSNPPPTQTSVRVTSSEPPNPASSSKSEKREPVRKRVLEKRGDDFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PFLAIWRLISNFLFSNPPPTQTSVRVTSSEPPNPASSSKSEKREPVRKRVLEKRGDDFKK
              430       440       450       460       470       480

              490       500        
pF1KE0 EGKIYRLRTQDDGEDENNTWNGNSTQQM
       ::::::::::::::::::::::::::::
CCDS42 EGKIYRLRTQDDGEDENNTWNGNSTQQM
              490       500        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:45:25 2016 done: Thu Nov  3 15:45:26 2016
 Total Scan time:  3.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]