FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0331, 654 aa
  1>>>pF1KE0331 654 - 654 aa - 654 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6125+/-0.00104; mu= 13.5198+/- 0.063
 mean_var=98.4687+/-19.428, 0's: 0 Z-trim(105.5): 18  B-trim: 85 in 1/50
 Lambda= 0.129248
 statistics sampled from 8433 (8439) to 8433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.259), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS9672.1 MIA2 gene_id:4253|Hs108|chr14           ( 654) 4270 807.2       0
CCDS41470.1 MIA3 gene_id:375056|Hs108|chr1         (1907)  381 82.2 7.1e-15


>>CCDS9672.1 MIA2 gene_id:4253|Hs108|chr14                (654 aa)
 initn: 4270 init1: 4270 opt: 4270  Z-score: 4306.8  bits: 807.2 E(32554):    0
Smith-Waterman score: 4270; 99.5% identity (99.8% similar) in 654 aa overlap (1-654:1-654)

               10        20        30        40        50        60
pF1KE0 MAKFGVHRILLLAISLTKCLESTKLLADLKKCGDLECEALINRVSAMRDYRGPDCRYLNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MAKFGVHRILLLAISLTKCLESTKLLADLKKCGDLECEALINRVSAMRDYRGPDCRYLNF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TKGEEISVYVKLAGEREDLWAGSKGKEFGYFPRDAVQIEEVFISEEIQMSTKESDFLCLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TKGEEISVYVKLAGEREDLWAGSKGKEFGYFPRDAVQIEEVFISEEIQMSTKESDFLCLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GVSYTFDNEDSELNGDYGENIYPYEEDKDEKSSIYESDFQIEPGFYATYESTLFEDQVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GVSYTFDNEDSELNGDYGENIYPYEEDKDEKSSIYESDFQIEPGFYATYESTLFEDQVPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LEAPEDIGSTSESKDWEEVVVESMEQDRIPEVHVPPSSAVSGVKEWFGLGGEQAEEKAFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LEAPEDIGSTSESKDWEEVVVESMEQDRIPEVHVPPSSAVSGVKEWFGLGGEQAEEKAFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SVIEPVQESSFRSRKIAVEDENDLEELNNGEPQTEHQQESESEIDSVPRTQSELASESEH
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS96 SVIEPVQESSFRSRKIAVEDENDLEELNNGEPQTEHQQESESEIDSVPKTQSELASESEH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IPKPQSTGWFGGGFTSYSGFGDEDTGLELIAEESNPPLQDFPNSISSDKEATVPCTEILT
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS96 IPKPQSTGWFGGGFTSYLGFGDEDTGLELIAEESNPPLQDFPNSISSDKEATVPCTEILT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EKKDTITNDSLSLKPSWFDFGFAILGFAYAKEDKIMLDDRKNEEDGGADEHEHPLTSELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EKKDTITNDSLSLKPSWFDFGFAILGFAYAKEDKIMLDDRKNEEDGGADEHEHPLTSELD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 PEKEQEIETIKIIETEDQIDKKPVSEKTDESDTIPYLKKFLYNFDNPWNFQNIPKETELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 PEKEQEIETIKIIETEDQIDKKPVSEKTDESDTIPYLKKFLYNFDNPWNFQNIPKETELP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 FPKQILDQNNVIENEETGEFSIDNYPTDNTKVMIFKSSYSLSDMVSNIELPTRIHEEVYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FPKQILDQNNVIENEETGEFSIDNYPTDNTKVMIFKSSYSLSDMVSNIELPTRIHEEVYF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 EPSSSKDSDENSKPSVDTEGPALVEIDRSVENTLLNSQMVSTDNSLSSQNYISQKEDASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EPSSSKDSDENSKPSVDTEGPALVEIDRSVENTLLNSQMVSTDNSLSSQNYISQKEDASE
              550       560       570       580       590       600

              610       620       630       640       650    
pF1KE0 FQILKYLFQIDVYDFMNSAFSPIVILTERVSLPFKPFAIILPILLNIRVAAKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS96 FQILKYLFQIDVYDFMNSAFSPIVILTERVSLPFKPFAIILPILLNIRVATKYV
              610       620       630       640       650    

>>CCDS41470.1 MIA3 gene_id:375056|Hs108|chr1              (1907 aa)
 initn: 378 init1: 347 opt: 381  Z-score: 380.5  bits: 82.2 E(32554): 7.1e-15
Smith-Waterman score: 407; 25.8% identity (52.9% similar) in 403 aa overlap (26-410:32-416)

                    10        20        30        40        50     
pF1KE0      MAKFGVHRILLLAISLTKCLESTKLLADLKKCGDLECEALINRVSAMRDYRGPDC
                                     ... : :.: ::  :. :  :..:. ::::
CCDS41 AAAPGLLVWLLVLRLPWRVPGQLDPSTGRRFSEHKLCADDECSMLMYRGEALEDFTGPDC
              10        20        30        40        50        60 

          60        70        80        90       100       110     
pF1KE0 RYLNFTKGEEISVYVKLAGEREDLWAGSKGKEFGYFPRDAVQIEEVFISEEIQMSTKESD
       :..:: ::. . :: :::    ..:::: :. :::::.: .:. . . .::.:. : :.:
CCDS41 RFVNFKKGDPVYVYYKLARGWPEVWAGSVGRTFGYFPKDLIQVVHEYTKEELQVPTDETD
              70        80        90       100       110       120 

         120       130       140       150       160       170     
pF1KE0 FLCLLGVSYTFDNEDSELNGDYGENIYPYEEDKDEKSSIYESDFQIEPGFYATYESTLFE
       :.:. :    : : . :    . :       :...      .:.. .:         : .
CCDS41 FVCFDGGRDDFHNYNVEELLGFLELYNSAATDSEKAVEKTLQDMEKNP--------ELSK
             130       140       150       160               170   

         180       190         200       210       220       230   
pF1KE0 DQVPALEAPEDIGSTSESKD--WEEVVVESMEQDRIPEVHVPPSSAVSGVKEWFGLGGEQ
       .. :    :: . ..:: .:  . : . . .::    . :   .: .. ..      :::
CCDS41 EREPE---PEPVEANSEESDSVFSENTEDLQEQFTTQKHHSHANSQANHAQ------GEQ
              180       190       200       210       220          

           240            250          260       270       280     
pF1KE0 AEEKAFESVIE-----PVQESSFRSRKIAV---EDENDLEELNNGEPQTEHQQESESEID
       :  ..:: ...     : .:..  : .  :   .:. :  .: . :   . . .  :  :
CCDS41 ASFESFEEMLQDKLKVPESENNKTSNSSQVSNEQDKIDAYKLLKKEMTLDLKTKFGSTAD
          230       240       250       260       270       280    

            290       300       310       320       330            
pF1KE0 SV---PRTQSELASESEHIPKPQSTGWFGGGFTSYSGFGDEDTGLELIA----EESNPPL
       ..    .:   ..:  . . .  .: ... :  .  .  : :  : :..    :. . : 
CCDS41 ALVSDDETTRLVTSLEDDFDEELDTEYYAVGKEDEENQEDFDE-LPLLTFTDGEDMKTPA
          290       300       310       320        330       340   

      340       350        360       370       380       390       
pF1KE0 QDFPNSISSDKEA-TVPCTEILTEKKDTITNDSLSLKPSWFDFGFAILGFAYAKEDKIML
       ..  ..  .:::  .    ..       : ::. ..  .: :  :.:.  .   .: . :
CCDS41 KSGVEKYPTDKEQNSNEEDKVQLTVPPGIKNDDKNILTTWGDTIFSIVTGGEETRDTMDL
           350       360       370       380       390       400   

       400       410       420       430       440       450       
pF1KE0 DDRKNEEDGGADEHEHPLTSELDPEKEQEIETIKIIETEDQIDKKPVSEKTDESDTIPYL
       .. ..::.   :.                                               
CCDS41 ESSSSEEEKEDDDDALVPDSKQGKPQSATDYSDPDNVDDGLFIVDIPKTNNDKEVNAEHH
           410       420       430       440       450       460   




654 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:38:02 2016 done: Thu Nov  3 15:38:03 2016
 Total Scan time:  3.520 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]