FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0341, 684 aa
  1>>>pF1KE0341 684 - 684 aa - 684 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8048+/-0.000873; mu= 16.6868+/- 0.052
 mean_var=66.8713+/-13.449, 0's: 0 Z-trim(105.7): 24  B-trim: 0 in 0/48
 Lambda= 0.156839
 statistics sampled from 8531 (8542) to 8531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.262), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(32554)
CCDS13929.1 FOXRED2 gene_id:80020|Hs108|chr22      ( 684) 4629 1056.7       0


>>CCDS13929.1 FOXRED2 gene_id:80020|Hs108|chr22           (684 aa)
 initn: 4629 init1: 4629 opt: 4629  Z-score: 5654.4  bits: 1056.7 E(32554):    0
Smith-Waterman score: 4629; 99.7% identity (100.0% similar) in 684 aa overlap (1-684:1-684)

               10        20        30        40        50        60
pF1KE0 MGLSAAAPLWGPPGLLLAIALHPALSVPPRRDYCVLGAGPAGLQMAYFLQRAGRDYAVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGLSAAAPLWGPPGLLLAIALHPALSVPPRRDYCVLGAGPAGLQMAYFLQRAGRDYAVFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RAPRPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPRLLFRHYSRAYFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RAPRPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPRLLFRHYSRAYFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DARDMVRYLGDFADTLGLRVQYNTTIAHVTLDKDRQAWNGHYFILTDQKGQVHQCSVLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS13 DARDMVRYLGDFADTLGLRVQYNTTIAHVTLDKDRQAWNGHYFILTDQKGQVHQCSVLFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ATGLSVPNQVDFPGSEYAEGYESVSVDPEDFVGQNVLILGRGNSAFETAENILGVTNFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ATGLSVPNQVDFPGSEYAEGYESVSVDPEDFVGQNVLILGRGNSAFETAENILGVTNFIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLTDLAILKDSKGKFHVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLTDLAILKDSKGKFHVTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KFFLEEASTNQSADSITLPQDDNDNFAMRVPYDRVIRCLGWNFDFSIFNKSLRLNSGNAF
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KFFLEEANTNQSADSITLPQDDNDNFAMRVPYDRVIRCLGWNFDFSIFNKSLRLNSGNAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GKKYPLIRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKKYPLIRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 TWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 ETLTGRKAKHGLFVINMEYGRNFSGPDKDVFFDDRSVGHTEDAWQSNFLHPVIYYYRYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ETLTGRKAKHGLFVINMEYGRNFSGPDKDVFFDDRSVGHTEDAWQSNFLHPVIYYYRYLP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 TEQEVRFRPAHWPLPRPTAIHHIVEDFLTDWTAPIGHILPLRRFLENCLDTDLRSFYAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TEQEVRFRPAHWPLPRPTAIHHIVEDFLTDWTAPIGHILPLRRFLENCLDTDLRSFYAES
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 CFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTGRRLEDSSQQLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTGRRLEDSSQQLGD
              610       620       630       640       650       660

              670       680    
pF1KE0 QEPLGSPLAPGPLAQSVDSNKEEL
       ::::::::::::::::::::::::
CCDS13 QEPLGSPLAPGPLAQSVDSNKEEL
              670       680    




684 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:09:03 2016 done: Thu Nov  3 15:09:03 2016
 Total Scan time:  3.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]