FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0343, 605 aa
  1>>>pF1KE0343 605 - 605 aa - 605 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9791+/-0.00101; mu= 9.4625+/- 0.061
 mean_var=205.3787+/-40.663, 0's: 0 Z-trim(111.5): 24  B-trim: 0 in 0/53
 Lambda= 0.089495
 statistics sampled from 12460 (12467) to 12460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.383), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS14094.2 NCAPH2 gene_id:29781|Hs108|chr22       ( 605) 4082 539.9 3.5e-153
CCDS54546.1 NCAPH2 gene_id:29781|Hs108|chr22       ( 606) 4070 538.4  1e-152
CCDS43038.1 NCAPH2 gene_id:29781|Hs108|chr22       ( 299) 1915 259.8 3.6e-69


>>CCDS14094.2 NCAPH2 gene_id:29781|Hs108|chr22            (605 aa)
 initn: 4082 init1: 4082 opt: 4082  Z-score: 2863.6  bits: 539.9 E(32554): 3.5e-153
Smith-Waterman score: 4082; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)

               10        20        30        40        50        60
pF1KE0 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLRER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 EGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 DFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 EEDHLEDSLEDLGAADDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEDHLEDSLEDLGAADDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFIA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 TSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAEL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 VAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAAP
              550       560       570       580       590       600

            
pF1KE0 SMAQP
       :::::
CCDS14 SMAQP
            

>>CCDS54546.1 NCAPH2 gene_id:29781|Hs108|chr22            (606 aa)
 initn: 3011 init1: 2947 opt: 4070  Z-score: 2855.2  bits: 538.4 E(32554): 1e-152
Smith-Waterman score: 4070; 99.8% identity (99.8% similar) in 606 aa overlap (1-605:1-606)

               10        20        30        40        50        60
pF1KE0 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLRER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 EGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 DFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPA
              370       380       390       400       410       420

              430        440       450       460       470         
pF1KE0 EEDHLEDSLEDLGAA-DDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFI
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EEDHLEDSLEDLGAAADDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFI
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KE0 ATSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAE
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KE0 LVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAA
              550       560       570       580       590       600

     600     
pF1KE0 PSMAQP
       ::::::
CCDS54 PSMAQP
             

>>CCDS43038.1 NCAPH2 gene_id:29781|Hs108|chr22            (299 aa)
 initn: 1915 init1: 1915 opt: 1915  Z-score: 1355.4  bits: 259.8 E(32554): 3.6e-69
Smith-Waterman score: 1915; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KE0 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LDDFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MNTCVPHPRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVCRSPVPALGFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQSAALPRRYMLRER
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS43 QEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPKESRSPQQVGPTWRPAEPEL 
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KE0 EGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQKRKRKGAAKLQ




605 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:02:05 2016 done: Thu Nov  3 15:02:05 2016
 Total Scan time:  3.320 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]