FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0355, 631 aa
  1>>>pF1KE0355 631 - 631 aa - 631 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2858+/-0.000969; mu= -0.1913+/- 0.059
 mean_var=312.2034+/-62.915, 0's: 0 Z-trim(115.3): 4  B-trim: 0 in 0/54
 Lambda= 0.072586
 statistics sampled from 15869 (15871) to 15869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.488), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(32554)
CCDS42220.1 VPS9D1 gene_id:9605|Hs108|chr16        ( 631) 4204 453.8 3.2e-127


>>CCDS42220.1 VPS9D1 gene_id:9605|Hs108|chr16             (631 aa)
 initn: 4204 init1: 4204 opt: 4204  Z-score: 2397.4  bits: 453.8 E(32554): 3.2e-127
Smith-Waterman score: 4204; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KE0 MAAAAGDGTVKPLQSAMKLANGAIELDTGNRPREAYTEYLRSIHYISQVLLEEVETTKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAAAGDGTVKPLQSAMKLANGAIELDTGNRPREAYTEYLRSIHYISQVLLEEVETTKEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GETVPPDTSKMLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GETVPPDTSKMLKLAQQCLERAQSTAAKLGKTRLKPTMPAAAPIPQPAGRHRRVYSDEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KLSPFLPPEIFQKLQGAESQSCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLSPFLPPEIFQKLQGAESQSCKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AILEYEQDHDWPKHWKAKLKRNPGDLSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSPSPLGDTASGLPDKDSSFEDLEQFLGTSERQGRGRGVQPEPQLQQLKTAVEEIHNAVD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 RLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 RNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIIC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 VCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHE
              550       560       570       580       590       600

              610       620       630 
pF1KE0 GYLIGEEGYCLTSLQSALSYVELLPRGGLAK
       :::::::::::::::::::::::::::::::
CCDS42 GYLIGEEGYCLTSLQSALSYVELLPRGGLAK
              610       620       630 




631 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:27:22 2016 done: Thu Nov  3 14:27:23 2016
 Total Scan time:  4.500 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]