FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0378, 581 aa
  1>>>pF1KE0378 581 - 581 aa - 581 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3206+/-0.00123; mu= -4.2740+/- 0.073
 mean_var=266.1371+/-63.359, 0's: 0 Z-trim(109.4): 19  B-trim: 552 in 2/50
 Lambda= 0.078618
 statistics sampled from 10865 (10873) to 10865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS46874.1 ZNF654 gene_id:55279|Hs108|chr3        ( 581) 3938 460.5 2.7e-129


>>CCDS46874.1 ZNF654 gene_id:55279|Hs108|chr3             (581 aa)
 initn: 3938 init1: 3938 opt: 3938  Z-score: 2434.8  bits: 460.5 E(32554): 2.7e-129
Smith-Waterman score: 3938; 100.0% identity (100.0% similar) in 581 aa overlap (1-581:1-581)

               10        20        30        40        50        60
pF1KE0 MLCNKEFLGGHIVRHAQAHQKKGSFACVICGRKFRNRGLMQKHLKNHVKKIQRQQIAAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MLCNKEFLGGHIVRHAQAHQKKGSFACVICGRKFRNRGLMQKHLKNHVKKIQRQQIAAAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QDDQEVTALEEINCSSSSISFENGNSDSKDLEVETLTASSEGNKEVIPEHVAEFIEIPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QDDQEVTALEEINCSSSSISFENGNSDSKDLEVETLTASSEGNKEVIPEHVAEFIEIPIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VPEDVIENVIENGSPNNSLNNVFKPLTECGDDYEEEEDEEGDYEEDDYDLNQETSVIHKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VPEDVIENVIENGSPNNSLNNVFKPLTECGDDYEEEEDEEGDYEEDDYDLNQETSVIHKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NGTVCHPKDIYATDQEGNFKCPALGCVRIFKRIGFLNKHAMTVHPTDLNVRQTVMKWSKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NGTVCHPKDIYATDQEGNFKCPALGCVRIFKRIGFLNKHAMTVHPTDLNVRQTVMKWSKG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KCKFCQRQFEDSQHFIDHLNRHSYPNVYFCLHFNCNESFKLPFQLAQHTKSHRIFQAQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KCKFCQRQFEDSQHFIDHLNRHSYPNVYFCLHFNCNESFKLPFQLAQHTKSHRIFQAQCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 FPECHELFEDLPLLYEHEAQHYLSKTPESSAQPSETILWDVQTDSNPNQEKDSSSNEKQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FPECHELFEDLPLLYEHEAQHYLSKTPESSAQPSETILWDVQTDSNPNQEKDSSSNEKQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ISLPVSTSKSRKESTEPKTCIESMEKKTDSLVQNGNERSDDTVSNISLIDQKMPDIEPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ISLPVSTSKSRKESTEPKTCIESMEKKTDSLVQNGNERSDDTVSNISLIDQKMPDIEPNS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 ENNCSSSDIVNGHSEIEQTPLVSSDPALKIDTNRIRTENGSILPSVVPQEHNTLPVSQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ENNCSSSDIVNGHSEIEQTPLVSSDPALKIDTNRIRTENGSILPSVVPQEHNTLPVSQAP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 SKPNLTSEHTSYGLILTKPYVRPLPPSYLDERYLSMPKRRKFLTDRVDACSDQDNVYKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SKPNLTSEHTSYGLILTKPYVRPLPPSYLDERYLSMPKRRKFLTDRVDACSDQDNVYKKS
              490       500       510       520       530       540

              550       560       570       580 
pF1KE0 VKRLRCGKCLTTYCNAEALEAHLAQKKCQTLFGFDSDDESA
       :::::::::::::::::::::::::::::::::::::::::
CCDS46 VKRLRCGKCLTTYCNAEALEAHLAQKKCQTLFGFDSDDESA
              550       560       570       580 




581 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:24:12 2016 done: Thu Nov  3 13:24:12 2016
 Total Scan time:  2.180 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]