FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0402, 304 aa
  1>>>pF1KE0402 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0038+/-0.000923; mu= 9.1530+/- 0.056
 mean_var=136.3034+/-27.173, 0's: 0 Z-trim(110.6): 32  B-trim: 485 in 1/50
 Lambda= 0.109855
 statistics sampled from 11702 (11709) to 11702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS53718.1 IFT46 gene_id:56912|Hs108|chr11        ( 304) 2035 333.5 1.2e-91
CCDS8399.1 IFT46 gene_id:56912|Hs108|chr11         ( 355) 1942 318.8 3.7e-87


>>CCDS53718.1 IFT46 gene_id:56912|Hs108|chr11             (304 aa)
 initn: 2035 init1: 2035 opt: 2035  Z-score: 1758.9  bits: 333.5 E(32554): 1.2e-91
Smith-Waterman score: 2035; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE0 MADNSSDECEEENNKEKKKTSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MADNSSDECEEENNKEKKKTSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAID
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDMET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDMET
              250       260       270       280       290       300

           
pF1KE0 LTFS
       ::::
CCDS53 LTFS
           

>>CCDS8399.1 IFT46 gene_id:56912|Hs108|chr11              (355 aa)
 initn: 1942 init1: 1942 opt: 1942  Z-score: 1678.3  bits: 318.8 E(32554): 3.7e-87
Smith-Waterman score: 1942; 98.6% identity (99.7% similar) in 294 aa overlap (11-304:62-355)

                                   10        20        30        40
pF1KE0                     MADNSSDECEEENNKEKKKTSQLTPQRGFSENEDDDDDDD
                                     ... ::::::::::::::::::::::::::
CCDS83 MDPVPPAPASLKCHQTPSHVLERVGWYRESQKHRKEKKKTSQLTPQRGFSENEDDDDDDD
              40        50        60        70        80        90 

               50        60        70        80        90       100
pF1KE0 DSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLK
             100       110       120       130       140       150 

              110       120       130       140       150       160
pF1KE0 PFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNI
             160       170       180       190       200       210 

              170       180       190       200       210       220
pF1KE0 TQHMKVKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TQHMKVKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEE
             220       230       240       250       260       270 

              230       240       250       260       270       280
pF1KE0 LLGKVSLPTAEIDCSLAEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLGKVSLPTAEIDCSLAEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAE
             280       290       300       310       320       330 

              290       300    
pF1KE0 GKKAFTPSSNSTSQAGDMETLTFS
       ::::::::::::::::::::::::
CCDS83 GKKAFTPSSNSTSQAGDMETLTFS
             340       350     




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:16:13 2016 done: Thu Nov  3 12:16:14 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]