FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0404, 274 aa
  1>>>pF1KE0404 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0214+/-0.000719; mu= 16.1195+/- 0.043
 mean_var=59.2578+/-11.633, 0's: 0 Z-trim(108.3): 9  B-trim: 0 in 0/50
 Lambda= 0.166610
 statistics sampled from 10138 (10142) to 10138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS41641.1 C11orf49 gene_id:79096|Hs108|chr11     ( 274) 1862 455.6 1.7e-128
CCDS31479.1 C11orf49 gene_id:79096|Hs108|chr11     ( 326) 1862 455.7  2e-128
CCDS7925.1 C11orf49 gene_id:79096|Hs108|chr11      ( 331) 1862 455.7  2e-128
CCDS31480.1 C11orf49 gene_id:79096|Hs108|chr11     ( 337) 1862 455.7  2e-128


>>CCDS41641.1 C11orf49 gene_id:79096|Hs108|chr11          (274 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 2420.4  bits: 455.6 E(32554): 1.7e-128
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE0 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
              190       200       210       220       230       240

              250       260       270    
pF1KE0 ALSKHRGINQALGALPDKGDLMHDPAMDEELERL
       ::::::::::::::::::::::::::::::::::
CCDS41 ALSKHRGINQALGALPDKGDLMHDPAMDEELERL
              250       260       270    

>>CCDS31479.1 C11orf49 gene_id:79096|Hs108|chr11          (326 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 2419.2  bits: 455.7 E(32554): 2e-128
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE0 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
              190       200       210       220       230       240

              250       260       270                              
pF1KE0 ALSKHRGINQALGALPDKGDLMHDPAMDEELERL                          
       ::::::::::::::::::::::::::::::::::                          
CCDS31 ALSKHRGINQALGALPDKGDLMHDPAMDEELERLVVRSKLHRTSRQHRAKEPGAFGFQRR
              250       260       270       280       290       300

CCDS31 EKQEALERVSSASVPTPYHYRWEPRE
              310       320      

>>CCDS7925.1 C11orf49 gene_id:79096|Hs108|chr11           (331 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 2419.1  bits: 455.7 E(32554): 2e-128
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE0 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
              190       200       210       220       230       240

              250       260       270                              
pF1KE0 ALSKHRGINQALGALPDKGDLMHDPAMDEELERL                          
       ::::::::::::::::::::::::::::::::::                          
CCDS79 ALSKHRGINQALGALPDKGDLMHDPAMDEELERLLAQVPGLVNSVTASPEASCLPSRTPP
              250       260       270       280       290       300

CCDS79 RVGSPWRPLHHSRKVDGESDGSTEETDESET
              310       320       330 

>>CCDS31480.1 C11orf49 gene_id:79096|Hs108|chr11          (337 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 2419.0  bits: 455.7 E(32554): 2e-128
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE0 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLSPERLALPDYEYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARIVLMDDAMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLLSGKNPNTVIVPTSSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLM
              190       200       210       220       230       240

              250       260       270                              
pF1KE0 ALSKHRGINQALGALPDKGDLMHDPAMDEELERL                          
       ::::::::::::::::::::::::::::::::::                          
CCDS31 ALSKHRGINQALGALPDKGDLMHDPAMDEELERLLLPFFRLAQVPGLVNSVTASPEASCL
              250       260       270       280       290       300

CCDS31 PSRTPPRVGSPWRPLHHSRKVDGESDGSTEETDESET
              310       320       330       




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:12:37 2016 done: Thu Nov  3 12:12:38 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]