FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0407, 254 aa
  1>>>pF1KE0407 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6218+/-0.00138; mu= 4.0980+/- 0.081
 mean_var=128.4034+/-25.326, 0's: 0 Z-trim(103.3): 40  B-trim: 0 in 0/50
 Lambda= 0.113184
 statistics sampled from 7308 (7323) to 7308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.225), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS8266.1 CCDC90B gene_id:60492|Hs108|chr11       ( 254) 1610 274.3 5.6e-74
CCDS66191.1 CCDC90B gene_id:60492|Hs108|chr11      ( 245) 1374 235.8 2.2e-62
CCDS66190.1 CCDC90B gene_id:60492|Hs108|chr11      ( 153)  942 165.1 2.5e-41
CCDS35495.1 MCUR1 gene_id:63933|Hs108|chr6         ( 359)  761 135.7 4.1e-32


>>CCDS8266.1 CCDC90B gene_id:60492|Hs108|chr11            (254 aa)
 initn: 1610 init1: 1610 opt: 1610  Z-score: 1441.6  bits: 274.3 E(32554): 5.6e-74
Smith-Waterman score: 1610; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE0 MNSRQAWRLFLSQGRGDRWVSRPRGHFSPALRREFFTTTTKEGYDRRPVDITPLEQRKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MNSRQAWRLFLSQGRGDRWVSRPRGHFSPALRREFFTTTTKEGYDRRPVDITPLEQRKLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVF
              190       200       210       220       230       240

              250    
pF1KE0 TCLAIALGFYRFWK
       ::::::::::::::
CCDS82 TCLAIALGFYRFWK
              250    

>>CCDS66191.1 CCDC90B gene_id:60492|Hs108|chr11           (245 aa)
 initn: 1368 init1: 1368 opt: 1374  Z-score: 1233.6  bits: 235.8 E(32554): 2.2e-62
Smith-Waterman score: 1374; 98.7% identity (99.1% similar) in 227 aa overlap (28-254:20-245)

               10        20        30        40        50        60
pF1KE0 MNSRQAWRLFLSQGRGDRWVSRPRGHFSPALRREFFTTTTKEGYDRRPVDITPLEQRKLT
                                  .:::  :::::::::::::::::::::::::::
CCDS66         MLANCGSVCEETQFRGTTVAPALG-EFFTTTTKEGYDRRPVDITPLEQRKLT
                       10        20         30        40        50 

               70        80        90       100       110       120
pF1KE0 FDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLD
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE0 AIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDM
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE0 FTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVF
             180       190       200       210       220       230 

              250    
pF1KE0 TCLAIALGFYRFWK
       ::::::::::::::
CCDS66 TCLAIALGFYRFWK
             240     

>>CCDS66190.1 CCDC90B gene_id:60492|Hs108|chr11           (153 aa)
 initn: 942 init1: 942 opt: 942  Z-score: 855.5  bits: 165.1 E(32554): 2.5e-41
Smith-Waterman score: 942; 100.0% identity (100.0% similar) in 153 aa overlap (102-254:1-153)

              80        90       100       110       120       130 
pF1KE0 THGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEK
                                     ::::::::::::::::::::::::::::::
CCDS66                               MVTQAQQEITVQQLMAHLDAIRKDMVILEK
                                             10        20        30

             140       150       160       170       180       190 
pF1KE0 SEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMET
               40        50        60        70        80        90

             200       210       220       230       240       250 
pF1KE0 TTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYR
              100       110       120       130       140       150

          
pF1KE0 FWK
       :::
CCDS66 FWK
          

>>CCDS35495.1 MCUR1 gene_id:63933|Hs108|chr6              (359 aa)
 initn: 820 init1: 747 opt: 761  Z-score: 690.0  bits: 135.7 E(32554): 4.1e-32
Smith-Waterman score: 761; 49.2% identity (77.0% similar) in 252 aa overlap (6-253:109-358)

                                        10        20         30    
pF1KE0                          MNSRQAWRLFLSQGRGDRWVSRPRGHF-SPAL---
                                     :::   : : .    . :. :  .:::   
CCDS35 RLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWR--CSPGVAAAAGALPQYHGPAPALVSC
       80        90       100       110         120       130      

              40        50        60        70        80        90 
pF1KE0 RREFFTTTTKEGYDRRPVDITPLEQRKLTFDTHALVQDLETHGFDKTQAETIVSALTALS
       :::.  .. .   .:.  :.:   .::: :::::::  :: .::   ::: :::::. . 
CCDS35 RRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKIL
        140       150       160       170       180       190      

             100       110       120       130       140       150 
pF1KE0 NVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQV
       ....: .::.:::. ::::: ::.:...  ..:::.:::::::. :::::::.:.:: :.
CCDS35 EANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQL
        200       210       220       230       240       250      

             160       170       180       190       200       210 
pF1KE0 KQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMETTTEFTKKDTQTKSIISETSN
       :::.: :. ..:.:.:::.:::.::: .... .::.:.:  ::..   .:    ...:. 
CCDS35 KQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTDR
        260       270       280       290       300       310      

             220       230       240       250    
pF1KE0 KIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK
       ::..:.:.:::..::.::..:.:::.:.::::..::::::.: 
CCDS35 KIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLWI
        320       330       340       350         




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:03:04 2016 done: Thu Nov  3 12:03:05 2016
 Total Scan time:  2.060 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]