FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0408, 329 aa
  1>>>pF1KE0408 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7733+/-0.000719; mu= 10.6801+/- 0.044
 mean_var=115.2915+/-23.223, 0's: 0 Z-trim(113.6): 12  B-trim: 189 in 1/50
 Lambda= 0.119447
 statistics sampled from 14192 (14194) to 14192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.436), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS46012.1 BABAM1 gene_id:29086|Hs108|chr19       ( 329) 2204 390.0 1.4e-108
CCDS74310.1 BABAM1 gene_id:29086|Hs108|chr19       ( 254)  953 174.3 9.2e-44


>>CCDS46012.1 BABAM1 gene_id:29086|Hs108|chr19            (329 aa)
 initn: 2204 init1: 2204 opt: 2204  Z-score: 2062.6  bits: 390.0 E(32554): 1.4e-108
Smith-Waterman score: 2204; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE0 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
              250       260       270       280       290       300

              310       320         
pF1KE0 HPLQRPCQSHASYSLLEEEDEAIEVEATV
       :::::::::::::::::::::::::::::
CCDS46 HPLQRPCQSHASYSLLEEEDEAIEVEATV
              310       320         

>>CCDS74310.1 BABAM1 gene_id:29086|Hs108|chr19            (254 aa)
 initn: 1087 init1: 947 opt: 953  Z-score: 899.1  bits: 174.3 E(32554): 9.2e-44
Smith-Waterman score: 1556; 77.2% identity (77.2% similar) in 329 aa overlap (1-329:1-254)

               10        20        30        40        50        60
pF1KE0 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS74 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNG-----
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE0 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST
                                                                   
CCDS74 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ----------QQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
                   120       130       140       150       160     

              250       260       270       280       290       300
pF1KE0 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
         170       180       190       200       210       220     

              310       320         
pF1KE0 HPLQRPCQSHASYSLLEEEDEAIEVEATV
       :::::::::::::::::::::::::::::
CCDS74 HPLQRPCQSHASYSLLEEEDEAIEVEATV
         230       240       250    




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:57:39 2016 done: Thu Nov  3 11:57:40 2016
 Total Scan time:  3.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]