FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0409, 195 aa
  1>>>pF1KE0409 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0248+/-0.000846; mu= 14.3510+/- 0.051
 mean_var=57.9944+/-11.549, 0's: 0 Z-trim(105.9): 21  B-trim: 233 in 1/52
 Lambda= 0.168415
 statistics sampled from 8693 (8701) to 8693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS44177.1 RWDD3 gene_id:25950|Hs108|chr1         ( 195) 1277 318.3 1.9e-87
CCDS41357.1 RWDD3 gene_id:25950|Hs108|chr1         ( 267) 1251 312.1   2e-85


>>CCDS44177.1 RWDD3 gene_id:25950|Hs108|chr1              (195 aa)
 initn: 1277 init1: 1277 opt: 1277  Z-score: 1683.5  bits: 318.3 E(32554): 1.9e-87
Smith-Waterman score: 1277; 99.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE0 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS44 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDVDIPLELVFHLPVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YPSCLPGISINSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
CCDS44 YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
              130       140       150       160       170       180

              190     
pF1KE0 ILLQGDRNNLKVPKS
       :::::::::::::::
CCDS44 ILLQGDRNNLKVPKS
              190     

>>CCDS41357.1 RWDD3 gene_id:25950|Hs108|chr1              (267 aa)
 initn: 1251 init1: 1251 opt: 1251  Z-score: 1647.3  bits: 312.1 E(32554): 2e-85
Smith-Waterman score: 1251; 99.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KE0 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS41 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDVDIPLELVFHLPVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YPSCLPGISINSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
CCDS41 YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
              130       140       150       160       170       180

              190                                                  
pF1KE0 ILLQGDRNNLKVPKS                                             
       :::::::::::                                                 
CCDS41 ILLQGDRNNLKEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYS
              190       200       210       220       230       240




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:53:16 2016 done: Thu Nov  3 11:53:16 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]