Result of FASTA (omim) for
pF1KE0410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0410, 185 aa
1>>>pF1KE0410 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5318+/-0.000283; mu= 17.6775+/- 0.018
mean_var=65.1612+/-12.598, 0's: 0 Z-trim(118.3): 15 B-trim: 16 in 1/56
Lambda= 0.158884
statistics sampled from 31190 (31205) to 31190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.366), width: 16
Scan time: 6.150
The best scores are: opt bits E(85289)
NP_001275493 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
NP_057540 (OMIM: 616877) transmembrane protein 9 i ( 183) 1217 286.8 1.3e-77
NP_001275494 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
NP_001275495 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
NP_001275496 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
NP_001275498 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
NP_001275497 (OMIM: 616877) transmembrane protein ( 183) 1217 286.8 1.3e-77
XP_011507687 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
NP_001275499 (OMIM: 616877) transmembrane protein ( 186) 1201 283.2 1.7e-76
XP_011507688 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
XP_011507689 (OMIM: 616877) PREDICTED: transmembra ( 186) 1201 283.2 1.7e-76
NP_001275500 (OMIM: 616877) transmembrane protein ( 208) 1081 255.7 3.5e-68
>>NP_001275493 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>NP_057540 (OMIM: 616877) transmembrane protein 9 isofo (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_057 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_057 HKMLS
180
>>NP_001275494 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>NP_001275495 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>NP_001275496 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>NP_001275498 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>NP_001275497 (OMIM: 616877) transmembrane protein 9 is (183 aa)
initn: 859 init1: 859 opt: 1217 Z-score: 1514.3 bits: 286.8 E(85289): 1.3e-77
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)
10 20 30 40 50 60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
120 130 140 150 160 170
pF1KE0 HKMLS
:::::
NP_001 HKMLS
180
>>XP_011507687 (OMIM: 616877) PREDICTED: transmembrane p (186 aa)
initn: 986 init1: 859 opt: 1201 Z-score: 1494.4 bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)
10 20 30 40 50
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
:::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::
XP_011 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
120 130 140 150 160 170
180
pF1KE0 FDRHKMLS
::::::::
XP_011 FDRHKMLS
180
>>NP_001275499 (OMIM: 616877) transmembrane protein 9 is (186 aa)
initn: 986 init1: 859 opt: 1201 Z-score: 1494.4 bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)
10 20 30 40 50
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
:::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::
NP_001 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
120 130 140 150 160 170
180
pF1KE0 FDRHKMLS
::::::::
NP_001 FDRHKMLS
180
>>XP_011507688 (OMIM: 616877) PREDICTED: transmembrane p (186 aa)
initn: 986 init1: 859 opt: 1201 Z-score: 1494.4 bits: 283.2 E(85289): 1.7e-76
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)
10 20 30 40 50
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
:::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::
XP_011 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
120 130 140 150 160 170
180
pF1KE0 FDRHKMLS
::::::::
XP_011 FDRHKMLS
180
185 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:52:02 2016 done: Thu Nov 3 11:52:02 2016
Total Scan time: 6.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]