FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0411, 311 aa
  1>>>pF1KE0411 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3498+/-0.000914; mu= 15.0355+/- 0.055
 mean_var=62.8504+/-13.052, 0's: 0 Z-trim(105.0): 19  B-trim: 419 in 1/48
 Lambda= 0.161778
 statistics sampled from 8186 (8193) to 8186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.252), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS45116.1 JKAMP gene_id:51528|Hs108|chr14        ( 311) 2098 498.4  3e-141
CCDS61462.1 JKAMP gene_id:51528|Hs108|chr14        ( 325) 2089 496.3 1.3e-140
CCDS45117.1 JKAMP gene_id:51528|Hs108|chr14        ( 305) 2051 487.4 5.9e-138
CCDS61463.1 JKAMP gene_id:51528|Hs108|chr14        ( 319) 2046 486.2 1.4e-137


>>CCDS45116.1 JKAMP gene_id:51528|Hs108|chr14             (311 aa)
 initn: 2098 init1: 2098 opt: 2098  Z-score: 2649.4  bits: 498.4 E(32554): 3e-141
Smith-Waterman score: 2098; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
              250       260       270       280       290       300

              310 
pF1KE0 SRILSEGANGH
       :::::::::::
CCDS45 SRILSEGANGH
              310 

>>CCDS61462.1 JKAMP gene_id:51528|Hs108|chr14             (325 aa)
 initn: 2089 init1: 2089 opt: 2089  Z-score: 2637.8  bits: 496.3 E(32554): 1.3e-140
Smith-Waterman score: 2089; 99.4% identity (100.0% similar) in 311 aa overlap (1-311:15-325)

                             10        20        30        40      
pF1KE0               MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
                     ..::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MKGEIQQSLGAWVLLTVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KE0 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE0 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE0 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KE0 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
              250       260       270       280       290       300

        290       300       310 
pF1KE0 PALFYLFTAKFTEPSRILSEGANGH
       :::::::::::::::::::::::::
CCDS61 PALFYLFTAKFTEPSRILSEGANGH
              310       320     

>>CCDS45117.1 JKAMP gene_id:51528|Hs108|chr14             (305 aa)
 initn: 2051 init1: 2051 opt: 2051  Z-score: 2590.3  bits: 487.4 E(32554): 5.9e-138
Smith-Waterman score: 2051; 100.0% identity (100.0% similar) in 304 aa overlap (8-311:2-305)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45       MACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
          240       250       260       270       280       290    

              310 
pF1KE0 SRILSEGANGH
       :::::::::::
CCDS45 SRILSEGANGH
          300     

>>CCDS61463.1 JKAMP gene_id:51528|Hs108|chr14             (319 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 2583.7  bits: 486.2 E(32554): 1.4e-137
Smith-Waterman score: 2046; 100.0% identity (100.0% similar) in 303 aa overlap (9-311:17-319)

                       10        20        30        40        50  
pF1KE0         MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MKGEIQQSLGAWVLLTCLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KE0 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE0 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KE0 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
              250       260       270       280       290       300

            300       310 
pF1KE0 FTAKFTEPSRILSEGANGH
       :::::::::::::::::::
CCDS61 FTAKFTEPSRILSEGANGH
              310         




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:48:29 2016 done: Thu Nov  3 11:48:29 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]