Result of FASTA (omim) for
pF1KE0412
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0412, 243 aa
1>>>pF1KE0412 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9536+/-0.000318; mu= 18.0017+/- 0.020
mean_var=81.1648+/-16.636, 0's: 0 Z-trim(118.2): 15 B-trim: 977 in 2/54
Lambda= 0.142361
statistics sampled from 30903 (30918) to 30903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.363), width: 16
Scan time: 7.100
The best scores are: opt bits E(85289)
NP_005077 (OMIM: 601599) sarcospan isoform 1 [Homo ( 243) 1661 350.0 2.2e-96
XP_011519157 (OMIM: 601599) PREDICTED: sarcospan i ( 140) 947 203.1 2.1e-52
XP_011519155 (OMIM: 601599) PREDICTED: sarcospan i ( 140) 947 203.1 2.1e-52
NP_001129295 (OMIM: 601599) sarcospan isoform 2 [H ( 140) 947 203.1 2.1e-52
XP_011519156 (OMIM: 601599) PREDICTED: sarcospan i ( 140) 947 203.1 2.1e-52
XP_005252364 (OMIM: 607710) PREDICTED: protein FAM ( 603) 156 41.3 0.0047
>>NP_005077 (OMIM: 601599) sarcospan isoform 1 [Homo sap (243 aa)
initn: 1661 init1: 1661 opt: 1661 Z-score: 1851.4 bits: 350.0 E(85289): 2.2e-96
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE0 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ
190 200 210 220 230 240
pF1KE0 QKI
:::
NP_005 QKI
>>XP_011519157 (OMIM: 601599) PREDICTED: sarcospan isofo (140 aa)
initn: 947 init1: 947 opt: 947 Z-score: 1061.9 bits: 203.1 E(85289): 2.1e-52
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (104-243:1-140)
80 90 100 110 120 130
pF1KE0 MASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYFLLSALGL
::::::::::::::::::::::::::::::
XP_011 MLCVSYQVDERTCIQFSMKLLYFLLSALGL
10 20 30
140 150 160 170 180 190
pF1KE0 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
40 50 60 70 80 90
200 210 220 230 240
pF1KE0 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
100 110 120 130 140
>>XP_011519155 (OMIM: 601599) PREDICTED: sarcospan isofo (140 aa)
initn: 947 init1: 947 opt: 947 Z-score: 1061.9 bits: 203.1 E(85289): 2.1e-52
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (104-243:1-140)
80 90 100 110 120 130
pF1KE0 MASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYFLLSALGL
::::::::::::::::::::::::::::::
XP_011 MLCVSYQVDERTCIQFSMKLLYFLLSALGL
10 20 30
140 150 160 170 180 190
pF1KE0 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
40 50 60 70 80 90
200 210 220 230 240
pF1KE0 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
100 110 120 130 140
>>NP_001129295 (OMIM: 601599) sarcospan isoform 2 [Homo (140 aa)
initn: 947 init1: 947 opt: 947 Z-score: 1061.9 bits: 203.1 E(85289): 2.1e-52
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (104-243:1-140)
80 90 100 110 120 130
pF1KE0 MASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYFLLSALGL
::::::::::::::::::::::::::::::
NP_001 MLCVSYQVDERTCIQFSMKLLYFLLSALGL
10 20 30
140 150 160 170 180 190
pF1KE0 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
40 50 60 70 80 90
200 210 220 230 240
pF1KE0 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
100 110 120 130 140
>>XP_011519156 (OMIM: 601599) PREDICTED: sarcospan isofo (140 aa)
initn: 947 init1: 947 opt: 947 Z-score: 1061.9 bits: 203.1 E(85289): 2.1e-52
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (104-243:1-140)
80 90 100 110 120 130
pF1KE0 MASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYFLLSALGL
::::::::::::::::::::::::::::::
XP_011 MLCVSYQVDERTCIQFSMKLLYFLLSALGL
10 20 30
140 150 160 170 180 190
pF1KE0 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
40 50 60 70 80 90
200 210 220 230 240
pF1KE0 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
100 110 120 130 140
>>XP_005252364 (OMIM: 607710) PREDICTED: protein FAM189A (603 aa)
initn: 105 init1: 63 opt: 156 Z-score: 175.9 bits: 41.3 E(85289): 0.0047
Smith-Waterman score: 156; 26.5% identity (51.7% similar) in 238 aa overlap (6-231:51-272)
10 20 30
pF1KE0 MGKNKQPRGQQRQGGPPAADA-AGPDDMEPKKGTG
:: .. : .. :: . :.: . .....
XP_005 PQAGGPGAAAAAAQEPPLPPLRPRWPRGALQPPSRPRCAATAAAGVLAAPPALSSRRAVA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE0 APKECGEEEPRTCCGCRFPLL-LALLQLALGIAVTVVGFLMASISSSLLVRDT-PFWAGI
: . : . ::: :.:::: :: .....: :.::: :... :::::
XP_005 AAAAAA---PGSALLPARPLLSLGLLQLILGCCMVALSFGALSLSSSPQVKNSCPFWAGS
90 100 110 120 130
100 110 120 130 140
pF1KE0 IVCLVAYLGL------FMLCVS-YQVDERTCIQFSMKLLYFLLSALG--LTVCVLAVAFA
: : . .:: ..: :. . . .:. ..: :.:. : .. : ..
XP_005 SVILSGIIGLTTWKRPMILLVNLFVLLSVVCVL--LNLAGFILGCQGAQFVSSVPRCDLV
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE0 AHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNL
... : :: .. .: ..: . : : :..: .: :. ::
XP_005 DLGEGKIC-FCCEE-FQPAKCT--DKENALKLF---PVQPCSAVHLLLKKVLFALCALNA
200 210 220 230 240
210 220 230 240
pF1KE0 VCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
. :::.: . :: ... : :
XP_005 LTTTVCLVAAAL----RYLQIFATRRSCIDESQISAEEAEDHGRIPDPDDFVPPVPPPSY
250 260 270 280 290 300
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:42:38 2016 done: Thu Nov 3 11:42:39 2016
Total Scan time: 7.100 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]