FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0413, 334 aa
  1>>>pF1KE0413 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3390+/-0.000909; mu= 15.5047+/- 0.054
 mean_var=64.1496+/-12.958, 0's: 0 Z-trim(105.1): 19  B-trim: 0 in 0/47
 Lambda= 0.160132
 statistics sampled from 8258 (8265) to 8258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS4365.1 MAT2B gene_id:27430|Hs108|chr5          ( 334) 2253 529.3 1.7e-150
CCDS4364.1 MAT2B gene_id:27430|Hs108|chr5          ( 323) 2113 497.0 8.8e-141


>>CCDS4365.1 MAT2B gene_id:27430|Hs108|chr5               (334 aa)
 initn: 2253 init1: 2253 opt: 2253  Z-score: 2815.6  bits: 529.3 E(32554): 1.7e-150
Smith-Waterman score: 2253; 99.7% identity (99.7% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KE0 MVGREKELSIHFVPGSCRLVEEEVNIPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVGREKELSIHFVPGSCRLVEEEVNIPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQCPRNAQLDCSKL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS43 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL
              250       260       270       280       290       300

              310       320       330    
pF1KE0 ETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH
       ::::::::::::::::::::::::::::::::::
CCDS43 ETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH
              310       320       330    

>>CCDS4364.1 MAT2B gene_id:27430|Hs108|chr5               (323 aa)
 initn: 2113 init1: 2113 opt: 2113  Z-score: 2641.0  bits: 497.0 E(32554): 8.8e-141
Smith-Waterman score: 2113; 99.4% identity (99.7% similar) in 314 aa overlap (21-334:10-323)

               10        20        30        40        50        60
pF1KE0 MVGREKELSIHFVPGSCRLVEEEVNIPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGF
                           .:::::::::::::::::::::::::::::::::::::::
CCDS43            MPEMPEDMEQEEVNIPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGF
                          10        20        30        40         

               70        80        90       100       110       120
pF1KE0 RRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KE0 AKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVL
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KE0 RIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KE0 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQCPRNAQLDCSKL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS43 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL
     230       240       250       260       270       280         

              310       320       330    
pF1KE0 ETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH
       ::::::::::::::::::::::::::::::::::
CCDS43 ETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH
     290       300       310       320   




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:37:55 2016 done: Thu Nov  3 11:37:56 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]