FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0415, 157 aa
  1>>>pF1KE0415 157 - 157 aa - 157 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9012+/-0.000892; mu= 13.1891+/- 0.053
 mean_var=50.4761+/-10.313, 0's: 0 Z-trim(104.7): 34  B-trim: 0 in 0/49
 Lambda= 0.180522
 statistics sampled from 7999 (8012) to 7999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.246), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS264.1 TMEM50A gene_id:23585|Hs108|chr1         ( 157) 1084 289.9 4.4e-79
CCDS13625.1 TMEM50B gene_id:757|Hs108|chr21        ( 158)  810 218.5 1.3e-57


>>CCDS264.1 TMEM50A gene_id:23585|Hs108|chr1              (157 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1533.2  bits: 289.9 E(32554): 4.4e-79
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
               70        80        90       100       110       120

              130       140       150       
pF1KE0 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
       :::::::::::::::::::::::::::::::::::::
CCDS26 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
              130       140       150       

>>CCDS13625.1 TMEM50B gene_id:757|Hs108|chr21             (158 aa)
 initn: 842 init1: 629 opt: 810  Z-score: 1147.5  bits: 218.5 E(32554): 1.3e-57
Smith-Waterman score: 810; 69.2% identity (92.5% similar) in 159 aa overlap (1-156:1-157)

                  10        20        30        40        50       
pF1KE0 MSGFLEGLR---CSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYH
       :.:::...:   : :::::.:.::..::..::.::::::::.:::::.::  ...::..:
CCDS13 MAGFLDNFRWPEC-ECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFH
               10         20        30        40        50         

        60        70        80        90       100       110       
pF1KE0 ACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFG
       .:::..:.::.:::::::.:::::::  ::::.::::.:::.:::: :::::::::::::
CCDS13 TCGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFG
      60        70        80        90       100       110         

       120       130       140       150       
pF1KE0 GYVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
       .::... : ::::.:::::::.:::. :..::::::.:: 
CCDS13 AYVTQNTD-VYPGLAVFFQNALIFFSTLIYKFGRTEELWT
     120        130       140       150        




157 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:35:41 2016 done: Thu Nov  3 11:35:41 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]