FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0418, 423 aa
  1>>>pF1KE0418 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4145+/-0.000829; mu= 16.6216+/- 0.050
 mean_var=68.7231+/-13.644, 0's: 0 Z-trim(107.2): 13  B-trim: 0 in 0/52
 Lambda= 0.154712
 statistics sampled from 9439 (9449) to 9439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.29), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS5658.1 TMEM130 gene_id:222865|Hs108|chr7       ( 423) 2875 650.8 7.4e-187
CCDS47650.1 TMEM130 gene_id:222865|Hs108|chr7      ( 435) 2505 568.2 5.5e-162
CCDS47649.1 TMEM130 gene_id:222865|Hs108|chr7      ( 321) 1989 452.9  2e-127


>>CCDS5658.1 TMEM130 gene_id:222865|Hs108|chr7            (423 aa)
 initn: 2875 init1: 2875 opt: 2875  Z-score: 3468.2  bits: 650.8 E(32554): 7.4e-187
Smith-Waterman score: 2875; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KE0 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 TLRNATQQKDMVENPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TLRNATQQKDMVENPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSVKT
              370       380       390       400       410       420

          
pF1KE0 YTV
       :::
CCDS56 YTV
          

>>CCDS47650.1 TMEM130 gene_id:222865|Hs108|chr7           (435 aa)
 initn: 2505 init1: 2505 opt: 2505  Z-score: 3021.6  bits: 568.2 E(32554): 5.5e-162
Smith-Waterman score: 2841; 97.2% identity (97.2% similar) in 435 aa overlap (1-423:1-435)

               10        20        30        40        50        60
pF1KE0 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
              310       320       330       340       350       360

              370                   380       390       400        
pF1KE0 TLRNATQQKDMVE------------NPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH
       :::::::::::::            :::::::::::::::::::::::::::::::::::
CCDS47 TLRNATQQKDMVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH
              370       380       390       400       410       420

      410       420   
pF1KE0 GLLPPLYKSVKTYTV
       :::::::::::::::
CCDS47 GLLPPLYKSVKTYTV
              430     

>>CCDS47649.1 TMEM130 gene_id:222865|Hs108|chr7           (321 aa)
 initn: 1989 init1: 1989 opt: 1989  Z-score: 2401.2  bits: 452.9 E(32554): 2e-127
Smith-Waterman score: 1989; 100.0% identity (100.0% similar) in 293 aa overlap (131-423:29-321)

              110       120       130       140       150       160
pF1KE0 GEFPVSVWVTAADCWMCQPVARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVS
                                     ::::::::::::::::::::::::::::::
CCDS47   MAQAVWSRLGRILWLACLLPWAPAGVAAEFLVGDLVVTQNTSLPWPSSYLTKTVLKVS
                 10        20        30        40        50        

              170       180       190       200       210       220
pF1KE0 FLLHDPSNFLKTALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FLLHDPSNFLKTALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPD
       60        70        80        90       100       110        

              230       240       250       260       270       280
pF1KE0 ATRAVKQKTGDFSASLKLQETLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ATRAVKQKTGDFSASLKLQETLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPE
      120       130       140       150       160       170        

              290       300       310       320       330       340
pF1KE0 CLPLEEGECHPVSVASTAYNLTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CLPLEEGECHPVSVASTAYNLTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPA
      180       190       200       210       220       230        

              350       360       370       380       390       400
pF1KE0 VFAFPCATLITVMLAFIMYMTLRNATQQKDMVENPEPPSGVRCCCQMCCGPFLLETPSEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VFAFPCATLITVMLAFIMYMTLRNATQQKDMVENPEPPSGVRCCCQMCCGPFLLETPSEY
      240       250       260       270       280       290        

              410       420   
pF1KE0 LEIVRENHGLLPPLYKSVKTYTV
       :::::::::::::::::::::::
CCDS47 LEIVRENHGLLPPLYKSVKTYTV
      300       310       320 




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:17:58 2016 done: Thu Nov  3 11:17:59 2016
 Total Scan time:  2.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]