FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0419, 161 aa
  1>>>pF1KE0419 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3421+/-0.000344; mu= 11.5924+/- 0.021
 mean_var=65.0609+/-13.158, 0's: 0 Z-trim(113.3): 20  B-trim: 0 in 0/54
 Lambda= 0.159006
 statistics sampled from 22637 (22642) to 22637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.265), width:  16
 Scan time:  5.490

The best scores are:                                      opt bits E(85289)
NP_001298089 (OMIM: 188230) thy-1 membrane glycopr ( 161) 1020 242.5 2.2e-64
NP_001298091 (OMIM: 188230) thy-1 membrane glycopr ( 161) 1020 242.5 2.2e-64
NP_006279 (OMIM: 188230) thy-1 membrane glycoprote ( 161) 1020 242.5 2.2e-64


>>NP_001298089 (OMIM: 188230) thy-1 membrane glycoprotei  (161 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1276.9  bits: 242.5 E(85289): 2.2e-64
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE0 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
               70        80        90       100       110       120

              130       140       150       160 
pF1KE0 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
       :::::::::::::::::::::::::::::::::::::::::
NP_001 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
              130       140       150       160 

>>NP_001298091 (OMIM: 188230) thy-1 membrane glycoprotei  (161 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1276.9  bits: 242.5 E(85289): 2.2e-64
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE0 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
               70        80        90       100       110       120

              130       140       150       160 
pF1KE0 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
       :::::::::::::::::::::::::::::::::::::::::
NP_001 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
              130       140       150       160 

>>NP_006279 (OMIM: 188230) thy-1 membrane glycoprotein p  (161 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1276.9  bits: 242.5 E(85289): 2.2e-64
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE0 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
               70        80        90       100       110       120

              130       140       150       160 
pF1KE0 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
       :::::::::::::::::::::::::::::::::::::::::
NP_006 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
              130       140       150       160 




161 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:10:03 2016 done: Thu Nov  3 11:10:04 2016
 Total Scan time:  5.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]