Result of FASTA (ccds) for
pF1KE0423
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0423, 235 aa
1>>>pF1KE0423 235 - 235 aa - 235 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0865+/-0.000837; mu= 10.4586+/- 0.051
mean_var=82.1284+/-16.314, 0's: 0 Z-trim(108.4): 19 B-trim: 509 in 2/49
Lambda= 0.141523
statistics sampled from 10164 (10175) to 10164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.313), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS14737.1 NAA10 gene_id:8260|Hs108|chrX ( 235) 1546 325.0 2.6e-89
CCDS47084.1 NAA11 gene_id:84779|Hs108|chr4 ( 229) 1230 260.5 6.8e-70
CCDS59179.1 NAA10 gene_id:8260|Hs108|chrX ( 220) 781 168.8 2.6e-42
CCDS42854.1 NAA20 gene_id:51126|Hs108|chr20 ( 166) 271 64.6 4.5e-11
>>CCDS14737.1 NAA10 gene_id:8260|Hs108|chrX (235 aa)
initn: 1546 init1: 1546 opt: 1546 Z-score: 1716.8 bits: 325.0 E(32554): 2.6e-89
Smith-Waterman score: 1546; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE0 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
190 200 210 220 230
>>CCDS47084.1 NAA11 gene_id:84779|Hs108|chr4 (229 aa)
initn: 1179 init1: 1070 opt: 1230 Z-score: 1368.3 bits: 260.5 E(32554): 6.8e-70
Smith-Waterman score: 1230; 81.3% identity (94.0% similar) in 235 aa overlap (1-235:1-229)
10 20 30 40 50 60
pF1KE0 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
::::::.:.::::::::::::::::::::::.::::::::::::::::.:::::::::::
CCDS47 MNIRNAQPDDLMNMQHCNLLCLPENYQMKYYLYHGLSWPQLSYIAEDEDGKIVGYVLAKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALH
::.::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS47 EEEPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRPALH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
:::::::::::::::::::::::::::::::.::::::::...:: :: .::::. ::.
CCDS47 LYSNTLNFQISEVEPKYYADGEDAYAMKRDLSQMADELRRQMDLK-KGGYVVLGSRENQ-
130 140 150 160 170
190 200 210 220 230
pF1KE0 ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
:..:.. .: ::: ..:. :.:.::.::: : .:..:::.:.::::.:::.:
CCDS47 ETQGSTLSDSEEAC-QQKNPATEESGSDSK---EPKESVESTNVQDSSESSDSTS
180 190 200 210 220
>>CCDS59179.1 NAA10 gene_id:8260|Hs108|chrX (220 aa)
initn: 1432 init1: 774 opt: 781 Z-score: 873.1 bits: 168.8 E(32554): 2.6e-42
Smith-Waterman score: 1406; 93.2% identity (93.6% similar) in 235 aa overlap (1-235:1-220)
10 20 30 40 50 60
pF1KE0 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRK-------
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 --------RISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
120 130 140 150 160
190 200 210 220 230
pF1KE0 ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
170 180 190 200 210 220
>>CCDS42854.1 NAA20 gene_id:51126|Hs108|chr20 (166 aa)
initn: 242 init1: 127 opt: 271 Z-score: 312.2 bits: 64.6 E(32554): 4.5e-11
Smith-Waterman score: 271; 35.1% identity (66.2% similar) in 148 aa overlap (12-153:1-146)
10 20 30 40 50 60
pF1KE0 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
: : ::: : :.: . .:. . ::. .:: .:...::...:
CCDS42 MLSQSCNLDPLTETYGIPFYLQYLAHWPEYFIVAEAPGGELMGYIMGKA
10 20 30 40
70 80 90 100 110
pF1KE0 EED-PDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAAL
: . . :::.:.:.: :::::: :::. . . : .. .:.: :: ::..:.
CCDS42 EGSVAREEWHGHVTALSVAPEFRRLGLAAKLMELLEE-ISERKGGFFVDLFVRVSNQVAV
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 HLYSNTLNFQISEVEPKYYA--DGE---DAYAMKRDLTQMADELRRHLELKEKGRHVVLG
..:.. :.... .. .::. .:: ::: :.. :..
CCDS42 NMYKQ-LGYSVYRTVIEYYSASNGEPDEDAYDMRKALSRDTEKKSIIPLPHPVRPEDIE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 AIENKVESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSA
235 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:43:24 2016 done: Thu Nov 3 10:43:24 2016
Total Scan time: 2.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]