Result of FASTA (ccds) for
pF1KE0428
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0428, 299 aa
1>>>pF1KE0428 299 - 299 aa - 299 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7127+/-0.000833; mu= 13.0601+/- 0.050
mean_var=63.5807+/-12.784, 0's: 0 Z-trim(106.1): 9 B-trim: 0 in 0/51
Lambda= 0.160847
statistics sampled from 8791 (8795) to 8791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.27), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS13252.1 UQCC1 gene_id:55245|Hs108|chr20 ( 299) 2052 484.8 3.5e-137
CCDS13253.2 UQCC1 gene_id:55245|Hs108|chr20 ( 273) 1318 314.4 6e-86
CCDS54458.1 UQCC1 gene_id:55245|Hs108|chr20 ( 231) 1309 312.3 2.2e-85
>>CCDS13252.1 UQCC1 gene_id:55245|Hs108|chr20 (299 aa)
initn: 2052 init1: 2052 opt: 2052 Z-score: 2576.4 bits: 484.8 E(32554): 3.5e-137
Smith-Waterman score: 2052; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE0 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE
190 200 210 220 230 240
250 260 270 280 290
pF1KE0 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
250 260 270 280 290
>>CCDS13253.2 UQCC1 gene_id:55245|Hs108|chr20 (273 aa)
initn: 1867 init1: 1318 opt: 1318 Z-score: 1656.6 bits: 314.4 E(32554): 6e-86
Smith-Waterman score: 1819; 91.3% identity (91.3% similar) in 299 aa overlap (1-299:1-273)
10 20 30 40 50 60
pF1KE0 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE
::::::::::: :::::::::::::::::::::::
CCDS13 EDVQQRGRVMG--------------------------GILSDDHGLAAALWRTFFNRKCE
190 200 210
250 260 270 280 290
pF1KE0 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
220 230 240 250 260 270
>>CCDS54458.1 UQCC1 gene_id:55245|Hs108|chr20 (231 aa)
initn: 1309 init1: 1309 opt: 1309 Z-score: 1646.5 bits: 312.3 E(32554): 2.2e-85
Smith-Waterman score: 1439; 77.3% identity (77.3% similar) in 299 aa overlap (1-299:1-231)
10 20 30 40 50 60
pF1KE0 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP
:::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQ-----------------
10 20 30 40
70 80 90 100 110 120
pF1KE0 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
:::::::::
CCDS54 ---------------------------------------------------KIKIAALRM
50
130 140 150 160 170 180
pF1KE0 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE0 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE
120 130 140 150 160 170
250 260 270 280 290
pF1KE0 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQSILKPHSPTYNDEGL
180 190 200 210 220 230
299 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:53:58 2016 done: Thu Nov 3 09:53:58 2016
Total Scan time: 1.910 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]