FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0440, 306 aa
  1>>>pF1KE0440 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5268+/-0.000814; mu= 14.5604+/- 0.049
 mean_var=65.5190+/-13.130, 0's: 0 Z-trim(107.7): 18  B-trim: 43 in 1/49
 Lambda= 0.158449
 statistics sampled from 9725 (9734) to 9725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS43338.1 LYSMD3 gene_id:116068|Hs108|chr5       ( 306) 2019 470.1 9.6e-133
CCDS68911.1 LYSMD3 gene_id:116068|Hs108|chr5       ( 127)  571 138.9 1.9e-33
CCDS66877.1 LYSMD4 gene_id:145748|Hs108|chr15      ( 296)  301 77.3 1.6e-14


>>CCDS43338.1 LYSMD3 gene_id:116068|Hs108|chr5            (306 aa)
 initn: 2019 init1: 2019 opt: 2019  Z-score: 2496.7  bits: 470.1 E(32554): 9.6e-133
Smith-Waterman score: 2019; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE0 MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKGIHFSQQDDHKLYSQDSQSP
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKGIHFSQQDDHKLYSQDSQSP
              250       260       270       280       290       300

             
pF1KE0 AAQQET
       ::::::
CCDS43 AAQQET
             

>>CCDS68911.1 LYSMD3 gene_id:116068|Hs108|chr5            (127 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 713.8  bits: 138.9 E(32554): 1.9e-33
Smith-Waterman score: 571; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE0 MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET
       ::::::::::::::::::::::::::                                  
CCDS68 DIIVLTKDIQEGDTLNAIALQYCCTVYQNSSKKVQFLDRNTLSSKRKTDFTSFICSILFR
               70        80        90       100       110       120

>>CCDS66877.1 LYSMD4 gene_id:145748|Hs108|chr15           (296 aa)
 initn: 384 init1: 202 opt: 301  Z-score: 374.4  bits: 77.3 E(32554): 1.6e-14
Smith-Waterman score: 437; 34.8% identity (60.2% similar) in 299 aa overlap (4-286:2-290)

                  10           20         30         40        50  
pF1KE0 MAGRHQN---RSFPLPGV---QSSGQVHAFGNCS-DS-DILEEDAEVYELRSRGKEKVRR
          ::..   ..:  :.:     ...:. : : : :: :  ::...   :: ::::. . 
CCDS66   MRHEELLTKTFQGPAVVCGTPTSHVYMFKNGSGDSGDSSEEESHRVVLRPRGKERHKS
                 10        20        30        40        50        

                60        70        80        90       100         
pF1KE0 STSRDRL---DDIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKI
       .. .       :...: ... . :.:: .:::: : :::::.:::.: .::..::.:.::
CCDS66 GVHQPPQAGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKI
       60        70        80        90       100       110        

     110       120       130       140       150        160        
pF1KE0 PVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPANDSL-AYSDSAGSFLKEVDRDI
       ::.. . : ::    :    :  : .  . :  :   :. .  : . .  .:.: .:.::
CCDS66 PVRNHGILMETHKELKP-LLSPSSETTVTVELPEADRAGAGTGAQAGQLMGFFKGIDQDI
      120       130        140       150       160       170       

      170       180       190       200       210       220        
pF1KE0 EQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIV
       :. :.    ..  :.:     :..:  . :    .  : :. ::: :: ::.:: :::..
CCDS66 ERAVQ----SEIFLHESYCMDTSHQP-LLP----APPKTPMDGADCGIQWWNAVFIMLLI
       180           190        200           210       220        

      230       240         250       260       270         280    
pF1KE0 GIITPVFYLLYYAILAKVDV--SHHSTVDSSHLHSKITPPSQQREMENGI--VPTKGIHF
       ::. :::::.:. : :. ..  : ..::  .   .  : :.:  ..  ..  : .   .:
CCDS66 GIVLPVFYLVYFKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAVAVPAVTSADSQF
      230       240       250       260       270       280        

          290       300      
pF1KE0 SQQDDHKLYSQDSQSPAAQQET
       ::                    
CCDS66 SQTTQAGS              
      290                    




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:52:13 2016 done: Thu Nov  3 08:52:13 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]