FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0442, 323 aa
  1>>>pF1KE0442 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5743+/-0.000956; mu= 14.4690+/- 0.057
 mean_var=66.2033+/-13.195, 0's: 0 Z-trim(103.7): 17  B-trim: 0 in 0/50
 Lambda= 0.157628
 statistics sampled from 7542 (7551) to 7542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.232), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS1688.1 FAM49A gene_id:81553|Hs108|chr2         ( 323) 2119 490.9 5.8e-139
CCDS6361.1 FAM49B gene_id:51571|Hs108|chr8         ( 324) 1682 391.5 4.8e-109
CCDS83327.1 FAM49B gene_id:51571|Hs108|chr8        ( 178)  995 235.2   3e-62


>>CCDS1688.1 FAM49A gene_id:81553|Hs108|chr2              (323 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 2608.3  bits: 490.9 E(32554): 5.8e-139
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE0 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN
              250       260       270       280       290       300

              310       320   
pF1KE0 ALRFTTKHLNDESTSKQIRAMLQ
       :::::::::::::::::::::::
CCDS16 ALRFTTKHLNDESTSKQIRAMLQ
              310       320   

>>CCDS6361.1 FAM49B gene_id:51571|Hs108|chr8              (324 aa)
 initn: 1681 init1: 1642 opt: 1682  Z-score: 2071.2  bits: 391.5 E(32554): 4.8e-109
Smith-Waterman score: 1682; 79.3% identity (92.9% similar) in 324 aa overlap (1-323:1-324)

                10        20        30        40        50         
pF1KE0 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG
       :::::::::  ..:. :.::::::::::::.:.::.::...::.:.:.:: :::.:.:::
CCDS63 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ
        :::.:::.: : .::::::.:: ::: .::.::::: ::: ::..:: .::  ::.:::
CCDS63 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN
       ::::::::::.:::::::::::::::: ::::::::::::::.:: ::::.  . :::::
CCDS63 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY
       ::.:::::::::::::::::::.:: .::::::.:::::::::::::.:::.::::::::
CCDS63 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE0 RSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLL
       :::::.:::. ::.::::::::::::::::::: :::::::::::::::.: :.::::::
CCDS63 RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL
              250       260       270       280       290       300

     300       310       320   
pF1KE0 NALRFTTKHLNDESTSKQIRAMLQ
       ::::.::::::::.:::::..:::
CCDS63 NALRYTTKHLNDETTSKQIKSMLQ
              310       320    

>>CCDS83327.1 FAM49B gene_id:51571|Hs108|chr8             (178 aa)
 initn: 995 init1: 995 opt: 995  Z-score: 1231.0  bits: 235.2 E(32554): 3e-62
Smith-Waterman score: 995; 84.8% identity (94.9% similar) in 178 aa overlap (146-323:1-178)

         120       130       140       150       160       170     
pF1KE0 TPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIE
                                     : ::::::::::::::.:: ::::.  . :
CCDS83                               MTNPAIQNDFSYYRRTLSRMRINNVPAEGE
                                             10        20        30

         180       190       200       210       220       230     
pF1KE0 NEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLE
       ::::::.:::::::::::::::::::.:: .::::::.:::::::::::::.:::.::::
CCDS83 NEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLE
               40        50        60        70        80        90

         240       250       260       270       280       290     
pF1KE0 TPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSV
       :::::::::.:::. ::.::::::::::::::::::: :::::::::::::::.: :.::
CCDS83 TPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSV
              100       110       120       130       140       150

         300       310       320   
pF1KE0 EGLLNALRFTTKHLNDESTSKQIRAMLQ
       ::::::::.::::::::.:::::..:::
CCDS83 EGLLNALRYTTKHLNDETTSKQIKSMLQ
              160       170        




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:40:03 2016 done: Thu Nov  3 08:40:04 2016
 Total Scan time:  2.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]