FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0443, 322 aa
  1>>>pF1KE0443 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7463+/-0.000871; mu= 13.4848+/- 0.052
 mean_var=66.0243+/-13.188, 0's: 0 Z-trim(106.4): 9  B-trim: 9 in 1/50
 Lambda= 0.157842
 statistics sampled from 8947 (8955) to 8947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.275), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS12297.1 MRI1 gene_id:84245|Hs108|chr19         ( 322) 2069 479.9 1.2e-135
CCDS32923.1 MRI1 gene_id:84245|Hs108|chr19         ( 369) 1090 257.0 1.7e-68


>>CCDS12297.1 MRI1 gene_id:84245|Hs108|chr19              (322 aa)
 initn: 2069 init1: 2069 opt: 2069  Z-score: 2548.9  bits: 479.9 E(32554): 1.2e-135
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE0 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE
              250       260       270       280       290       300

              310       320  
pF1KE0 ELRTALTTTISSRDGTLDGPQM
       ::::::::::::::::::::::
CCDS12 ELRTALTTTISSRDGTLDGPQM
              310       320  

>>CCDS32923.1 MRI1 gene_id:84245|Hs108|chr19              (369 aa)
 initn: 1847 init1: 1090 opt: 1090  Z-score: 1343.1  bits: 257.0 E(32554): 1.7e-68
Smith-Waterman score: 1683; 81.6% identity (83.1% similar) in 354 aa overlap (16-322:16-369)

               10        20        30        40        50        60
pF1KE0 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA
               70        80        90       100       110       120

              130                140        150                    
pF1KE0 VRERRETELCEHWEEHTRQ---------RELPLR-GPLGG--TVL---------------
       ::::      .  :.  :.         :.:  : .: ::  :::               
CCDS32 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT
              130       140       150       160       170       180

                               160       170       180       190   
pF1KE0 --------------------ETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV
                           ::::::::::::::::::::::::::::::::::::::::
CCDS32 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV
              190       200       210       220       230       240

           200       210       220       230       240       250   
pF1KE0 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER
              250       260       270       280       290       300

           260       270       280       290       300       310   
pF1KE0 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR
              310       320       330       340       350       360

           320  
pF1KE0 DGTLDGPQM
       :::::::::
CCDS32 DGTLDGPQM
                




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:38:39 2016 done: Thu Nov  3 08:38:39 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]