FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0443, 322 aa 1>>>pF1KE0443 322 - 322 aa - 322 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7463+/-0.000871; mu= 13.4848+/- 0.052 mean_var=66.0243+/-13.188, 0's: 0 Z-trim(106.4): 9 B-trim: 9 in 1/50 Lambda= 0.157842 statistics sampled from 8947 (8955) to 8947 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.275), width: 16 Scan time: 2.360 The best scores are: opt bits E(32554) CCDS12297.1 MRI1 gene_id:84245|Hs108|chr19 ( 322) 2069 479.9 1.2e-135 CCDS32923.1 MRI1 gene_id:84245|Hs108|chr19 ( 369) 1090 257.0 1.7e-68 >>CCDS12297.1 MRI1 gene_id:84245|Hs108|chr19 (322 aa) initn: 2069 init1: 2069 opt: 2069 Z-score: 2548.9 bits: 479.9 E(32554): 1.2e-135 Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322) 10 20 30 40 50 60 pF1KE0 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VRERRETELCEHWEEHTRQRELPLRGPLGGTVLETRPYNQGARLTAFELVYEQIPATLIT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RLETGKEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPE 250 260 270 280 290 300 310 320 pF1KE0 ELRTALTTTISSRDGTLDGPQM :::::::::::::::::::::: CCDS12 ELRTALTTTISSRDGTLDGPQM 310 320 >>CCDS32923.1 MRI1 gene_id:84245|Hs108|chr19 (369 aa) initn: 1847 init1: 1090 opt: 1090 Z-score: 1343.1 bits: 257.0 E(32554): 1.7e-68 Smith-Waterman score: 1683; 81.6% identity (83.1% similar) in 354 aa overlap (16-322:16-369) 10 20 30 40 50 60 pF1KE0 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA ::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MTLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VELQAGAGGPGLAALVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEA 70 80 90 100 110 120 130 140 150 pF1KE0 VRERRETELCEHWEEHTRQ---------RELPLR-GPLGG--TVL--------------- :::: . :. :. :.: : .: :: ::: CCDS32 VRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGT 130 140 150 160 170 180 160 170 180 190 pF1KE0 --------------------ETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV :::::::::::::::::::::::::::::::::::::::: CCDS32 ALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGV 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE0 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEER 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE0 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLITGGIITELGVFAPEELRTALTTTISSR 310 320 330 340 350 360 320 pF1KE0 DGTLDGPQM ::::::::: CCDS32 DGTLDGPQM 322 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 08:38:39 2016 done: Thu Nov 3 08:38:39 2016 Total Scan time: 2.360 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]