FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0449, 271 aa
  1>>>pF1KE0449 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0646+/-0.000616; mu= 13.4905+/- 0.037
 mean_var=103.5807+/-20.378, 0's: 0 Z-trim(114.8): 6  B-trim: 0 in 0/53
 Lambda= 0.126019
 statistics sampled from 15315 (15320) to 15315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.471), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS34319.1 MRNIP gene_id:51149|Hs108|chr5         ( 343) 1231 233.3 1.7e-61
CCDS34318.1 MRNIP gene_id:51149|Hs108|chr5         ( 288)  879 169.3 2.8e-42


>>CCDS34319.1 MRNIP gene_id:51149|Hs108|chr5              (343 aa)
 initn: 1231 init1: 1231 opt: 1231  Z-score: 1217.4  bits: 233.3 E(32554): 1.7e-61
Smith-Waterman score: 1231; 98.9% identity (99.4% similar) in 180 aa overlap (84-263:42-221)

            60        70        80        90       100       110   
pF1KE0 VLFAEFPRHGAPASELPVPSGSEMDGAESGKAYGEGSGADCRRHVQKLNLLQGQVSELPL
                                     .:::::::::::::::::::::::::::::
CCDS34 CCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLNLLQGQVSELPL
              20        30        40        50        60        70 

           120       130       140       150       160       170   
pF1KE0 RSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVCFSKQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVCFSKQP
              80        90       100       110       120       130 

           180       190       200       210       220       230   
pF1KE0 SSKMEEPGPRFSQDLPRKRKWSGSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQG
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS34 SSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQG
             140       150       160       170       180       190 

           240       250       260       270                       
pF1KE0 SSPCLQENSADCSAGELRGPGKELWSPIQQDGYKEILF                      
       ::::::::::::::::::::::::::::::                              
CCDS34 SSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQ
             200       210       220       230       240       250 

>>CCDS34318.1 MRNIP gene_id:51149|Hs108|chr5              (288 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 872.6  bits: 169.3 E(32554): 2.8e-42
Smith-Waterman score: 879; 99.2% identity (99.2% similar) in 125 aa overlap (139-263:42-166)

      110       120       130       140       150       160        
pF1KE0 SELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVC
                                     ::::::::::::::::::::::::::::::
CCDS34 CCSCRLFQAHQVKKSVKWTCKACGEKQSFLQEKSQPSESRWLKYLEKDSQELELEGTGVC
              20        30        40        50        60        70 

      170       180       190       200       210       220        
pF1KE0 FSKQPSSKMEEPGPRFSQDLPRKRKWSGSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTW
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS34 FSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTW
              80        90       100       110       120       130 

      230       240       250       260       270                  
pF1KE0 KVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQDGYKEILF                 
       :::::::::::::::::::::::::::::::::::                         
CCDS34 KVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQ
             140       150       160       170       180       190 

CCDS34 PRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWD
             200       210       220       230       240       250 




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:17:52 2016 done: Thu Nov  3 08:17:53 2016
 Total Scan time:  2.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]