FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0451, 308 aa
  1>>>pF1KE0451 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0622+/-0.000762; mu= 16.6663+/- 0.046
 mean_var=60.5378+/-12.118, 0's: 0 Z-trim(107.5): 14  B-trim: 0 in 0/50
 Lambda= 0.164839
 statistics sampled from 9608 (9613) to 9608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1        ( 308) 2082 503.4  9e-143
CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19       ( 361) 1319 322.0 4.3e-88
CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1       ( 274) 1238 302.6 2.2e-82


>>CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1             (308 aa)
 initn: 2082 init1: 2082 opt: 2082  Z-score: 2676.7  bits: 503.4 E(32554): 9e-143
Smith-Waterman score: 2082; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KE0 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLLLLAERLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLLLLAERLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLTHRLVLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLTHRLVLGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGVEFEANTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGVEFEANTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFH
              250       260       270       280       290       300

               
pF1KE0 CGFSITVG
       ::::::::
CCDS12 CGFSITVG
               

>>CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19            (361 aa)
 initn: 1340 init1: 1319 opt: 1319  Z-score: 1695.0  bits: 322.0 E(32554): 4.3e-88
Smith-Waterman score: 1319; 64.6% identity (89.5% similar) in 285 aa overlap (24-308:77-361)

                      10        20        30        40        50   
pF1KE0        MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVN
                                     :::::.:.: :: ::..:: :::::::.::
CCDS12 GTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVN
         50        60        70        80        90       100      

            60        70        80        90       100       110   
pF1KE0 KVLSSHFQVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLL
       : ::.:::: ::. .:..:  .::. ..:.:  ::::::.::..:::::.::::::::. 
CCDS12 KGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIH
        110       120       130       140       150       160      

           120       130       140       150       160       170   
pF1KE0 LLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLT
        :.  ::.: ..::::.::..:: ::::::.:.::..::::::..  : :.:::.:::.:
CCDS12 QLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSIT
        170       180       190       200       210       220      

           180       190       200       210       220       230   
pF1KE0 HRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGV
         :.:::::::::::::::....:::::.  .:.::...:..: ::.:::.:..:.::::
CCDS12 PCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV
        230       240       250       260       270       280      

           240       250       260       270       280       290   
pF1KE0 EFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLN
       ::::.::.:::. ::::.: ::.::..:.: ::::: :::.::::.::::.:::::::::
CCDS12 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLN
        290       300       310       320       330       340      

           300        
pF1KE0 HWRNRFHCGFSITVG
       : .:.:.:::..:.:
CCDS12 HRKNKFQCGFGLTIG
        350       360 

>>CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1            (274 aa)
 initn: 1238 init1: 1238 opt: 1238  Z-score: 1592.7  bits: 302.6 E(32554): 2.2e-82
Smith-Waterman score: 1797; 89.0% identity (89.0% similar) in 308 aa overlap (1-308:1-274)

               10        20        30        40        50        60
pF1KE0 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLLLLAERLR
       ::::::::::::::::::::::::::::::::                            
CCDS65 QVAHTIHMSALGLPGYHLHAAYAGDWQLSPTE----------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 AKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLTHRLVLGG
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ------TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLTHRLVLGG
                  100       110       120       130       140      

              190       200       210       220       230       240
pF1KE0 ELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGVEFEANTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGVEFEANTR
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KE0 LQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFH
        210       220       230       240       250       260      

               
pF1KE0 CGFSITVG
       ::::::::
CCDS65 CGFSITVG
        270    




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:57:52 2016 done: Thu Nov  3 07:57:53 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]