FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0452, 462 aa
  1>>>pF1KE0452 462 - 462 aa - 462 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7360+/-0.00042; mu= 15.4083+/- 0.026
 mean_var=72.6009+/-14.221, 0's: 0 Z-trim(111.3): 12  B-trim: 0 in 0/53
 Lambda= 0.150523
 statistics sampled from 19847 (19850) to 19847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.233), width:  16
 Scan time:  8.800

The best scores are:                                      opt bits E(85289)
XP_005267204 (OMIM: 612327) PREDICTED: glycoprotei ( 462) 3152 694.1  2e-199
NP_078917 (OMIM: 612327) glycoprotein endo-alpha-1 ( 462) 3152 694.1  2e-199


>>XP_005267204 (OMIM: 612327) PREDICTED: glycoprotein en  (462 aa)
 initn: 3152 init1: 3152 opt: 3152  Z-score: 3701.2  bits: 694.1 E(85289): 2e-199
Smith-Waterman score: 3152; 99.8% identity (99.8% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE0 MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IHWNHPVLGHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
              370       380       390       400       410       420

              430       440       450       460  
pF1KE0 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS
       ::::::::::::::::::::::::::::::::::::::::::
XP_005 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS
              430       440       450       460  

>>NP_078917 (OMIM: 612327) glycoprotein endo-alpha-1,2-m  (462 aa)
 initn: 3152 init1: 3152 opt: 3152  Z-score: 3701.2  bits: 694.1 E(85289): 2e-199
Smith-Waterman score: 3152; 99.8% identity (99.8% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE0 MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IHWNHPVLGHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
              370       380       390       400       410       420

              430       440       450       460  
pF1KE0 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS
       ::::::::::::::::::::::::::::::::::::::::::
NP_078 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS
              430       440       450       460  




462 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:51:20 2016 done: Thu Nov  3 07:51:21 2016
 Total Scan time:  8.800 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]