FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0459, 158 aa
  1>>>pF1KE0459 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2913+/-0.000517; mu= 14.3530+/- 0.031
 mean_var=89.5143+/-17.724, 0's: 0 Z-trim(117.4): 7  B-trim: 0 in 0/51
 Lambda= 0.135559
 statistics sampled from 18158 (18164) to 18158 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.558), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS54049.1 C16orf95 gene_id:100506581|Hs108|chr16 ( 158) 1160 235.1 1.4e-62
CCDS73921.1 C16orf95 gene_id:100506581|Hs108|chr16 ( 143)  807 166.0 7.8e-42
CCDS58491.1 C16orf95 gene_id:100506581|Hs108|chr16 ( 239)  809 166.6 8.5e-42


>>CCDS54049.1 C16orf95 gene_id:100506581|Hs108|chr16      (158 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 1237.1  bits: 235.1 E(32554): 1.4e-62
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KE0 MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
               70        80        90       100       110       120

              130       140       150        
pF1KE0 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
       ::::::::::::::::::::::::::::::::::::::
CCDS54 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
              130       140       150        

>>CCDS73921.1 C16orf95 gene_id:100506581|Hs108|chr16      (143 aa)
 initn: 803 init1: 803 opt: 807  Z-score: 864.6  bits: 166.0 E(32554): 7.8e-42
Smith-Waterman score: 807; 86.3% identity (89.3% similar) in 131 aa overlap (29-158:13-143)

               10        20        30        40         50         
pF1KE0 MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQ-DGRNSTFQTYK
                                   :: . :  :       :. .  :.::::::::
CCDS73                 MRPLEQPQALLPGGRARGASGSAGWHSHPARRMAGKNSTFQTYK
                               10        20        30        40    

      60        70        80        90       100       110         
pF1KE0 KEVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KEVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAG
           50        60        70        80        90       100    

     120       130       140       150        
pF1KE0 TTAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
       :::::::::::::::::::::::::::::::::::::::
CCDS73 TTAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
          110       120       130       140   

>>CCDS58491.1 C16orf95 gene_id:100506581|Hs108|chr16      (239 aa)
 initn: 831 init1: 809 opt: 809  Z-score: 863.8  bits: 166.6 E(32554): 8.5e-42
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE0 MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS58 EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQSQKTVQFPIP
               70        80        90       100       110       120

              130       140       150                              
pF1KE0 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS                      
                                                                   
CCDS58 QTAKMCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCW
              130       140       150       160       170       180




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:12:34 2016 done: Thu Nov  3 07:12:35 2016
 Total Scan time:  2.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]