FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0463, 416 aa
  1>>>pF1KE0463 416 - 416 aa - 416 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3815+/-0.000918; mu= 12.1487+/- 0.056
 mean_var=81.9823+/-16.031, 0's: 0 Z-trim(106.6): 14  B-trim: 3 in 1/51
 Lambda= 0.141649
 statistics sampled from 9057 (9060) to 9057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS4069.1 FAM172A gene_id:83989|Hs108|chr5        ( 416) 2756 572.9 1.9e-163
CCDS54880.1 FAM172A gene_id:83989|Hs108|chr5       ( 370) 2468 514.1 8.9e-146
CCDS54879.1 FAM172A gene_id:83989|Hs108|chr5       ( 306) 1517 319.7 2.4e-87


>>CCDS4069.1 FAM172A gene_id:83989|Hs108|chr5             (416 aa)
 initn: 2756 init1: 2756 opt: 2756  Z-score: 3047.9  bits: 572.9 E(32554): 1.9e-163
Smith-Waterman score: 2756; 99.5% identity (99.8% similar) in 416 aa overlap (1-416:1-416)

               10        20        30        40        50        60
pF1KE0 MSISLSSLILLPIWINMAQIQQGGPDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSISLSSLILLPIWINMAQIQQGGPDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPDTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KVSIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KVSIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IPFIKRAVAEGYGVIVLNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IPFIKRAVAEGYGVIVLNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RDFYEKYRNPQREKEMMQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RDFYEKYRNPQREKEMMQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ELMIQREADVKNKVTAVALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ELMIQREADVKNKVTAVALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESM
              310       320       330       340       350       360

              370       380       390       400       410      
pF1KE0 LPDCPRVPAGTDRHELTSWKSFPSIFKFFTEASEAKTNSLKPAVTRRSHRIKHEEL
       ::::::: :::::::::::::::::::::::::::::.::::::::::::::::::
CCDS40 LPDCPRVSAGTDRHELTSWKSFPSIFKFFTEASEAKTSSLKPAVTRRSHRIKHEEL
              370       380       390       400       410      

>>CCDS54880.1 FAM172A gene_id:83989|Hs108|chr5            (370 aa)
 initn: 2468 init1: 2468 opt: 2468  Z-score: 2730.6  bits: 514.1 E(32554): 8.9e-146
Smith-Waterman score: 2468; 99.5% identity (99.7% similar) in 370 aa overlap (47-416:1-370)

         20        30        40        50        60        70      
pF1KE0 MAQIQQGGPDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPDTLEGFEYAFNEKGQLRHI
                                     ::::::::::::::::::::::::::::::
CCDS54                               MKKDEPPLDFPDTLEGFEYAFNEKGQLRHI
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 KTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLKKVSIPVDATESEPKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLKKVSIPVDATESEPKSF
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 IFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVAEGYGVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVAEGYGVIV
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KE0 LNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEM
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KE0 MQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTA
              220       230       240       250       260       270

        320       330       340       350       360       370      
pF1KE0 VALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVPAGTDRHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS54 VALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSAGTDRHEL
              280       290       300       310       320       330

        380       390       400       410      
pF1KE0 TSWKSFPSIFKFFTEASEAKTNSLKPAVTRRSHRIKHEEL
       :::::::::::::::::::::.::::::::::::::::::
CCDS54 TSWKSFPSIFKFFTEASEAKTSSLKPAVTRRSHRIKHEEL
              340       350       360       370

>>CCDS54879.1 FAM172A gene_id:83989|Hs108|chr5            (306 aa)
 initn: 1517 init1: 1517 opt: 1517  Z-score: 1681.6  bits: 319.7 E(32554): 2.4e-87
Smith-Waterman score: 1918; 82.2% identity (82.4% similar) in 370 aa overlap (47-416:1-306)

         20        30        40        50        60        70      
pF1KE0 MAQIQQGGPDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPDTLEGFEYAFNEKGQLRHI
                                     ::::::::::::::::::::::::::::::
CCDS54                               MKKDEPPLDFPDTLEGFEYAFNEKGQLRHI
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 KTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLKKVSIPVDATESEPKSF
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS54 KTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKDCNLKKVSIP-----------
               40        50        60        70                    

        140       150       160       170       180       190      
pF1KE0 IFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVAEGYGVIV
                                                            :::::::
CCDS54 -----------------------------------------------------EGYGVIV
                                                           80      

        200       210       220       230       240       250      
pF1KE0 LNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEM
         90       100       110       120       130       140      

        260       270       280       290       300       310      
pF1KE0 MQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTA
        150       160       170       180       190       200      

        320       330       340       350       360       370      
pF1KE0 VALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVPAGTDRHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS54 VALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSAGTDRHEL
        210       220       230       240       250       260      

        380       390       400       410      
pF1KE0 TSWKSFPSIFKFFTEASEAKTNSLKPAVTRRSHRIKHEEL
       :::::::::::::::::::::.::::::::::::::::::
CCDS54 TSWKSFPSIFKFFTEASEAKTSSLKPAVTRRSHRIKHEEL
        270       280       290       300      




416 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:06:06 2016 done: Thu Nov  3 07:06:06 2016
 Total Scan time:  2.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]