FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0475, 252 aa
  1>>>pF1KE0475 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5445+/-0.000808; mu= 15.0036+/- 0.049
 mean_var=86.7940+/-17.206, 0's: 0 Z-trim(108.9): 6  B-trim: 2 in 1/51
 Lambda= 0.137667
 statistics sampled from 10545 (10547) to 10545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.324), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS10722.1 ORC6 gene_id:23594|Hs108|chr16         ( 252) 1626 332.3 1.9e-91


>>CCDS10722.1 ORC6 gene_id:23594|Hs108|chr16              (252 aa)
 initn: 1626 init1: 1626 opt: 1626  Z-score: 1755.1  bits: 332.3 E(32554): 1.9e-91
Smith-Waterman score: 1626; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE0 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
              190       200       210       220       230       240

              250  
pF1KE0 ENAASAQKATAE
       ::::::::::::
CCDS10 ENAASAQKATAE
              250  




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:51:57 2016 done: Thu Nov  3 05:51:57 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]