FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0475, 252 aa
  1>>>pF1KE0475 252 - 252 aa - 252 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1386+/-0.000338; mu= 17.7483+/- 0.021
 mean_var=91.9383+/-18.682, 0's: 0 Z-trim(116.2): 3  B-trim: 394 in 3/51
 Lambda= 0.133760
 statistics sampled from 27203 (27205) to 27203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.319), width:  16
 Scan time:  7.310

The best scores are:                                      opt bits E(85289)
NP_055136 (OMIM: 607213,613803) origin recognition ( 252) 1626 323.3 2.6e-88
XP_011521280 (OMIM: 607213,613803) PREDICTED: orig ( 192)  968 196.2 3.6e-50


>>NP_055136 (OMIM: 607213,613803) origin recognition com  (252 aa)
 initn: 1626 init1: 1626 opt: 1626  Z-score: 1706.6  bits: 323.3 E(85289): 2.6e-88
Smith-Waterman score: 1626; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE0 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
              190       200       210       220       230       240

              250  
pF1KE0 ENAASAQKATAE
       ::::::::::::
NP_055 ENAASAQKATAE
              250  

>>XP_011521280 (OMIM: 607213,613803) PREDICTED: origin r  (192 aa)
 initn: 968 init1: 968 opt: 968  Z-score: 1021.8  bits: 196.2 E(85289): 3.6e-50
Smith-Waterman score: 968; 95.5% identity (98.1% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
       :::::::::::::::::::::::::::::: .  ...                       
XP_011 YESSLPQTQQVDLDLSRPLFTSAALLSACKYIPRSINWHLWKTSLQFNKSMCIYGGSAAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
                                                                   
XP_011 IVENSENSQLYF                                                
              190                                                  




252 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:51:57 2016 done: Thu Nov  3 05:51:58 2016
 Total Scan time:  7.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]