Result of FASTA (ccds) for
pF1KE0476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0476, 245 aa
1>>>pF1KE0476 245 - 245 aa - 245 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7382+/-0.00101; mu= 1.9476+/- 0.061
mean_var=286.9779+/-58.846, 0's: 0 Z-trim(114.9): 134 B-trim: 367 in 1/52
Lambda= 0.075709
statistics sampled from 15349 (15491) to 15349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.476), width: 16
Scan time: 2.310
The best scores are: opt bits E(32554)
CCDS227.1 C1QC gene_id:714|Hs108|chr1 ( 245) 1737 202.0 3e-52
CCDS228.1 C1QB gene_id:713|Hs108|chr1 ( 253) 816 101.5 5.8e-22
CCDS226.1 C1QA gene_id:712|Hs108|chr1 ( 245) 539 71.2 7.3e-13
CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11 ( 243) 524 69.5 2.3e-12
>>CCDS227.1 C1QC gene_id:714|Hs108|chr1 (245 aa)
initn: 1737 init1: 1737 opt: 1737 Z-score: 1051.6 bits: 202.0 E(32554): 3e-52
Smith-Waterman score: 1737; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
190 200 210 220 230 240
pF1KE0 LLFPD
:::::
CCDS22 LLFPD
>>CCDS228.1 C1QB gene_id:713|Hs108|chr1 (253 aa)
initn: 593 init1: 593 opt: 816 Z-score: 507.8 bits: 101.5 E(32554): 5.8e-22
Smith-Waterman score: 816; 50.0% identity (74.0% similar) in 246 aa overlap (8-245:5-250)
10 20 30 40 50
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR--GQANTGCYG---IPGMPGLPGAPGKDGYDGLPG
.: .. .:.::::: : .::. .: : :::.::.::.:: :: : ::
CCDS22 MMMKIPWGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPG
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
::: :.:.. : .: :.::.::.::.::: :: :: : : :: : :: :: : ::
CCDS22 IKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
. .:..:: . : .. :::. :.:: ...:. .:::::::::::::.::::
CCDS22 ATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ANLCVLLYRS---GVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQG
.:::: :.:. . :::::: .. .: ::..::..:.:. ::.:.: ..: ...:..:
CCDS22 GNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEG
180 190 200 210 220 230
240
pF1KE0 SDSVFSGFLLFPD
..:.:::::::::
CCDS22 ANSIFSGFLLFPDMEA
240 250
>>CCDS226.1 C1QA gene_id:712|Hs108|chr1 (245 aa)
initn: 464 init1: 169 opt: 539 Z-score: 344.4 bits: 71.2 E(32554): 7.3e-13
Smith-Waterman score: 539; 38.8% identity (63.2% similar) in 242 aa overlap (15-244:8-243)
10 20 30 40 50
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTG-CYGIPGMPGLPGAPGKDGYDGLPGPKGE
:.: .: . : .... : . : : : ::. : :: : .::
CCDS22 MEGPRGWLVLCVLAISLASMVTEDLCRAPDGKKGEAGRPGRRGRPGLKGEQGE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 PGIPAI-PGIRGPKGQKGEPGLPGHPGK---NGPMGPPGMPGVPGPMGIPGEPGEEGRYK
:: :.: ::.: ::..:::: :.::: :: :: : :.:: : : ::. :
CCDS22 PGAPGIRTGIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGTKGSPGN---IK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
.. . .:.. :. .:: .... :..:.:: . :.. .:.:.: ::: :::....
CCDS22 DQPRPAFSAIRR--NPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQ
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 ANLCVLLYRSGV----KVVTFCGHTSK-TNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
..:. . :. . . :: :.: :: :::..:.:: :..::. . .
CCDS22 WEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHI-Y
170 180 190 200 210 220
240
pF1KE0 QGS--DSVFSGFLLFPD
::: ::::::::.::
CCDS22 QGSEADSVFSGFLIFPSA
230 240
>>CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11 (243 aa)
initn: 627 init1: 256 opt: 524 Z-score: 335.6 bits: 69.5 E(32554): 2.3e-12
Smith-Waterman score: 533; 41.1% identity (62.6% similar) in 246 aa overlap (13-245:1-235)
10 20 30 40 50
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR-GQANTGCYGIP----GMPGLPGAPGKDGYDGLPG
.. ::.:::: : :. :: : :::::.::. : .::::
CCDS84 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPG
10 20 30 40
60 70 80 90 100 110
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
:. : . :: : ::. :.::::: : : :: : :: : : :: .
CCDS84 RDGRDGRDGAPGAPGEKGEGGRPGLPG------PRGDPGPRGEAGPAGPTGPAGECSVPP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 QKFQSVFTVTR-QTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHAS-
. :.:.. : ... :: .. . :. ::.: :: ::. ::::::.:::.:::. ::.
CCDS84 R---SAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATV
110 120 130 140 150
180 190 200 210 220 230
pF1KE0 HTANLCVLLYRSGVKVVTFC---GHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
. :.: : ..: ....: : : .. :::...::. ..::. :. :..::
CCDS84 YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG-VGDYIGI
160 170 180 190 200 210
240
pF1KE0 QGS---DSVFSGFLLFPD
.: ::.:::::.. :
CCDS84 YASIKTDSTFSGFLVYSDWHSSPVFA
220 230 240
245 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:34:17 2016 done: Thu Nov 3 05:34:17 2016
Total Scan time: 2.310 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]