Result of FASTA (ccds) for
pF1KE0484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0484, 226 aa
1>>>pF1KE0484 226 - 226 aa - 226 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2900+/-0.00116; mu= 5.4179+/- 0.069
mean_var=116.1782+/-23.307, 0's: 0 Z-trim(104.7): 19 B-trim: 55 in 1/51
Lambda= 0.118990
statistics sampled from 8046 (8051) to 8046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.247), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS13745.1 ATP6V1E1 gene_id:529|Hs108|chr22 ( 226) 1427 255.7 1.7e-68
CCDS42977.1 ATP6V1E1 gene_id:529|Hs108|chr22 ( 204) 1229 221.7 2.7e-58
CCDS1826.1 ATP6V1E2 gene_id:90423|Hs108|chr2 ( 226) 1086 197.2 7.2e-51
CCDS42978.1 ATP6V1E1 gene_id:529|Hs108|chr22 ( 196) 720 134.3 5.2e-32
>>CCDS13745.1 ATP6V1E1 gene_id:529|Hs108|chr22 (226 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1343.1 bits: 255.7 E(32554): 1.7e-68
Smith-Waterman score: 1427; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
130 140 150 160 170 180
190 200 210 220
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
190 200 210 220
>>CCDS42977.1 ATP6V1E1 gene_id:529|Hs108|chr22 (204 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1160.1 bits: 221.7 E(32554): 2.7e-58
Smith-Waterman score: 1236; 90.3% identity (90.3% similar) in 226 aa overlap (1-226:1-204)
10 20 30 40 50 60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
::::::::::: :::::::::::::::::::::::::::
CCDS42 MALSDADVQKQ----------------------AEEEFNIEKGRLVQTQRLKIMEYYEKK
10 20 30
70 80 90 100 110 120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
100 110 120 130 140 150
190 200 210 220
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
160 170 180 190 200
>>CCDS1826.1 ATP6V1E2 gene_id:90423|Hs108|chr2 (226 aa)
initn: 1103 init1: 1086 opt: 1086 Z-score: 1026.8 bits: 197.2 E(32554): 7.2e-51
Smith-Waterman score: 1086; 76.9% identity (89.8% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
:::::.::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MALSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
:::::::::: ::.. :::::::::::.:::.:::.::: :::..:.: :: ::: ::
CCDS18 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
:::: .:::: :::::: ::. ::.:::::::: : ... :.::::.:.:: . :::
CCDS18 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
130 140 150 160 170 180
190 200 210 220
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
::.:.:...::::::::::::: :.: :::.: ::::::.::::.
CCDS18 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
190 200 210 220
>>CCDS42978.1 ATP6V1E1 gene_id:529|Hs108|chr22 (196 aa)
initn: 695 init1: 678 opt: 720 Z-score: 688.2 bits: 134.3 E(32554): 5.2e-32
Smith-Waterman score: 1176; 86.7% identity (86.7% similar) in 226 aa overlap (1-226:1-196)
10 20 30 40 50 60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
::::::::::::::::::::::::::::::::
CCDS42 EKQIEQQKKIQMSNLMNQARLKVLRARDDLIT----------------------------
70 80 90
130 140 150 160 170 180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 --GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
100 110 120 130 140 150
190 200 210 220
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
160 170 180 190
226 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:04:26 2016 done: Thu Nov 3 05:04:26 2016
Total Scan time: 1.870 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]