FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0484, 226 aa
  1>>>pF1KE0484 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1689+/-0.000484; mu= 6.3156+/- 0.030
 mean_var=130.0218+/-26.156, 0's: 0 Z-trim(112.3): 4  B-trim: 224 in 1/53
 Lambda= 0.112478
 statistics sampled from 21164 (21167) to 21164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.248), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(85289)
NP_001687 (OMIM: 108746) V-type proton ATPase subu ( 226) 1427 242.7 3.8e-64
NP_001034455 (OMIM: 108746) V-type proton ATPase s ( 204) 1229 210.6 1.6e-54
NP_001034456 (OMIM: 108746) V-type proton ATPase s ( 196)  720 127.9 1.2e-29


>>NP_001687 (OMIM: 108746) V-type proton ATPase subunit   (226 aa)
 initn: 1427 init1: 1427 opt: 1427  Z-score: 1272.7  bits: 242.7 E(85289): 3.8e-64
Smith-Waterman score: 1427; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
              130       140       150       160       170       180

              190       200       210       220      
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
              190       200       210       220      

>>NP_001034455 (OMIM: 108746) V-type proton ATPase subun  (204 aa)
 initn: 1229 init1: 1229 opt: 1229  Z-score: 1099.7  bits: 210.6 E(85289): 1.6e-54
Smith-Waterman score: 1236; 90.3% identity (90.3% similar) in 226 aa overlap (1-226:1-204)

               10        20        30        40        50        60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       :::::::::::                      :::::::::::::::::::::::::::
NP_001 MALSDADVQKQ----------------------AEEEFNIEKGRLVQTQRLKIMEYYEKK
               10                              20        30        

               70        80        90       100       110       120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
      100       110       120       130       140       150        

              190       200       210       220      
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
      160       170       180       190       200    

>>NP_001034456 (OMIM: 108746) V-type proton ATPase subun  (196 aa)
 initn: 695 init1: 678 opt: 720  Z-score: 653.6  bits: 127.9 E(85289): 1.2e-29
Smith-Waterman score: 1176; 86.7% identity (86.7% similar) in 226 aa overlap (1-226:1-196)

               10        20        30        40        50        60
pF1KE0 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
       ::::::::::::::::::::::::::::::::                            
NP_001 EKQIEQQKKIQMSNLMNQARLKVLRARDDLIT----------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
              100       110       120       130       140       150

              190       200       210       220      
pF1KE0 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
              160       170       180       190      




226 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:04:26 2016 done: Thu Nov  3 05:04:27 2016
 Total Scan time:  4.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]