FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0503, 220 aa
  1>>>pF1KE0503 220 - 220 aa - 220 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2077+/-0.000349; mu= 5.4612+/- 0.022
 mean_var=136.1247+/-26.491, 0's: 0 Z-trim(118.7): 7  B-trim: 53 in 1/55
 Lambda= 0.109927
 statistics sampled from 31921 (31928) to 31921 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.374), width:  16
 Scan time:  7.100

The best scores are:                                      opt bits E(85289)
NP_005666 (OMIM: 192430,601279) protein DGCR6 [Hom ( 220) 1438 238.8 5.2e-63
NP_150282 (OMIM: 609459) protein DGCR6L [Homo sapi ( 220) 1393 231.7 7.4e-61
XP_011528696 (OMIM: 192430,601279) PREDICTED: prot ( 151)  878 149.9 2.1e-36


>>NP_005666 (OMIM: 192430,601279) protein DGCR6 [Homo sa  (220 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1252.2  bits: 238.8 E(85289): 5.2e-63
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
       ::::::::::::::::::::::::::::::::::::::::
NP_005 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
              190       200       210       220

>>NP_150282 (OMIM: 609459) protein DGCR6L [Homo sapiens]  (220 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1213.6  bits: 231.7 E(85289): 7.4e-61
Smith-Waterman score: 1393; 97.3% identity (99.1% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 MERYAAALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_150 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVVQAAQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_150 RELEAVEHRIREEQRAMDQKIILELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
       ::::::::::: ::.:::::::::: ::::::::::::::
NP_150 ELIRKLQQRGCRAGNAALGLGGPWQSPAAQCDQKGSPVPP
              190       200       210       220

>>XP_011528696 (OMIM: 192430,601279) PREDICTED: protein   (151 aa)
 initn: 878 init1: 878 opt: 878  Z-score: 774.5  bits: 149.9 E(85289): 2.1e-36
Smith-Waterman score: 878; 100.0% identity (100.0% similar) in 130 aa overlap (91-220:22-151)

               70        80        90       100       110       120
pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
                                     ::::::::::::::::::::::::::::::
XP_011          MEEAGVLPSADTPLAWLLCWVVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
                        10        20        30        40        50 

              130       140       150       160       170       180
pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
              60        70        80        90       100       110 

              190       200       210       220
pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
       ::::::::::::::::::::::::::::::::::::::::
XP_011 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
             120       130       140       150 




220 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:53:32 2016 done: Thu Nov  3 03:53:33 2016
 Total Scan time:  7.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]